Evidence map›Paper›PMID 28112929›Full record

ArticleJournal of the American Chemical Society2017

Dynamics of Methylated Cytosine Flipping by UHRF1.

Vasyl Kilin, Krishna Gavvala, Nicolas P F Barthes, Benoît Y Michel, Dongwon Shin, Christian Boudier, Olivier Mauffret, Valeriy Yashchuk, Marc Mousli, Marc Ruff and 6 more

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Epigenetics-targeted drugs: current paradigms and future challenges.Signal transduction and targeted therapy · 2024
    Review
  7. Isomorphic Fluorescent Nucleosides.Accounts of chemical research · 2024
    Article
  8. Article
  9. Rationalizing the environment-dependent photophysical behavior of a DNA luminescent probe by classical and non-adiabatic molecular dynamics simulations.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023
    Article
  10. Review
  11. Inherently Emissive Puromycin Analogues for Live Cell Labelling.Angewandte Chemie (International ed. in English) · 2023
    Article
  12. Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. What Makes Thienoguanosine an Outstanding Fluorescent DNA Probe?Journal of the American Chemical Society · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Vasyl KilinLaboratoire de Biophotonique et Pharmacologie, UMR 7213 CNRS, Université de Strasbourg, Faculté de pharmacie , 74 Route du Rhin, 67401 Illkirch, France.
Krishna GavvalaLaboratoire de Biophotonique et Pharmacologie, UMR 7213 CNRS, Université de Strasbourg, Faculté de pharmacie , 74 Route du Rhin, 67401 Illkirch, France.
Nicolas P F BarthesInstitut de Chimie de Nice, UMR 7272 CNRS, Université Côte d'Azur , Parc Valrose, 06108 Nice Cedex 2, France.
Benoît Y MichelInstitut de Chimie de Nice, UMR 7272 CNRS, Université Côte d'Azur , Parc Valrose, 06108 Nice Cedex 2, France.
Dongwon ShinTriLink BioTechnologies, LLC. , San Diego, California 92121, United States.
Christian BoudierLaboratoire de Biophotonique et Pharmacologie, UMR 7213 CNRS, Université de Strasbourg, Faculté de pharmacie , 74 Route du Rhin, 67401 Illkirch, France.
Olivier MauffretLBPA, UMR 8113 CNRS, ENS Paris-Saclay, Université Paris Saclay , 94235 Cachan Cedex, France.
Valeriy YashchukDepartment of Physics, Kiev National Taras Shevchenko University , Kiev 01601, Ukraine.
Marc MousliLaboratoire de Biophotonique et Pharmacologie, UMR 7213 CNRS, Université de Strasbourg, Faculté de pharmacie , 74 Route du Rhin, 67401 Illkirch, France.
Marc RuffInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U964 CNRS UMR 7104, Université de Strasbourg , Illkirch 67000, France.
Florence GrangerInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U964 CNRS UMR 7104, Université de Strasbourg , Illkirch 67000, France.
Sylvia EilerInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U964 CNRS UMR 7104, Université de Strasbourg , Illkirch 67000, France.
Christian BronnerInstitut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), INSERM U964 CNRS UMR 7104, Université de Strasbourg , Illkirch 67000, France.
Yitzhak TorDepartment of Chemistry and Biochemistry, University of California , San Diego, La Jolla, California 92093-0358, United States.
Alain BurgerInstitut de Chimie de Nice, UMR 7272 CNRS, Université Côte d'Azur , Parc Valrose, 06108 Nice Cedex 2, France.
Yves MélyLaboratoire de Biophotonique et Pharmacologie, UMR 7213 CNRS, Université de Strasbourg, Faculté de pharmacie , 74 Route du Rhin, 67401 Illkirch, France.ORCID 0000-0001-7328-8269

Funding

Fluorescent Nucleosides and OligonucleotidesR01GM069773 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TOR, YITZHAK · 2004 to 2020
$5.0M
NIGMS NIH HHS R01 GM069773
6 · The paper itself

Abstract

DNA methylation patterns, which are critical for gene expression, are replicated by DNA methyltransferase 1 (DNMT1) and ubiquitin-like containing PHD and RING finger domains 1 (UHRF1) proteins. This replication is initiated by the recognition of hemimethylated CpG sites and further flipping of methylated cytosines (mC) by the Set and Ring Associated (SRA) domain of UHRF1. Although crystallography has shed light on the mechanism of mC flipping by SRA, tools are required to monitor in real time how SRA reads DNA and flips the modified nucleobase. To accomplish this aim, we have utilized two distinct fluorescent nucleobase surrogates, 2-thienyl-3-hydroxychromone nucleoside (3HCnt) and thienoguanosine (

Indexed as

ThermodynamicsCCAAT-Enhancer-Binding ProteinsCytosineDNADNA MethylationDNA ReplicationFluorescenceHumansKineticsMolecular StructureUbiquitin-Protein LigasesCCAAT-Enhancer-Binding ProteinsCytosineDNAUbiquitin-Protein LigasesUHRF1 protein, human

Identifiers

PMID28112929
PMCPMC5335914

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.