ArticlePlant & cell physiology2017
TOMATOMICS: A Web Database for Integrated Omics Information in Tomato.
Article in Plant & cell physiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Basal Differences in the Transcriptional Profiles of Tomato Roots Associated with the Presence/Absence of the Resistance GenePlants (Basel, Switzerland) · 2026Article
- An advanced 10K SNP panel for genotyping tomato (Frontiers in plant science · 2025Article
- CGD: a multi-omics database forHorticulture research · 2024Article
- A novel tomato interspecific (Horticulture research · 2024Article
- Transcriptome analysis of tomato plants following salicylic acid-induced immunity againstPlant biotechnology (Tokyo, Japan) · 2023Article
- The hydroxyproline O-arabinosyltransferase FIN4 is required for tomato pollen intine development.Plant reproduction · 2023Article
- You Are What You Eat: Application of Metabolomics Approaches to Advance Nutrition Research.Foods (Basel, Switzerland) · 2021Review
- Review
- Changes in the microsomal proteome of tomato fruit during ripening.Scientific reports · 2019Article
- Comparative co-expression network analysis extracts thePlant biotechnology (Tokyo, Japan) · 2019Article
- Genome sequence analysis of the fairy ring-forming fungus Lepista sordida and gene candidates for interaction with plants.Scientific reports · 2019Article
- PICEAdatabase: a web database for Picea omics and phenotypic information.Database : the journal of biological databases and curation · 2019Article
- Morphological Characterization of Root System Architecture in Diverse Tomato Genotypes during Early Growth.International journal of molecular sciences · 2018Article
- Tomato ATP-Binding Cassette Transporter SlABCB4 Is Involved in Auxin Transport in the Developing Fruit.Plants (Basel, Switzerland) · 2018Article
- The parthenocarpic gene Pat-k is generated by a natural mutation of SlAGL6 affecting fruit development in tomato (Solanum lycopersicum L.).BMC plant biology · 2018Article
- Article
Corrections and comments
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Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Solanum lycopersicum (tomato) is an important agronomic crop and a major model fruit-producing plant. To facilitate basic and applied research, comprehensive experimental resources and omics information on tomato are available following their development. Mutant lines and cDNA clones from a dwarf cultivar, Micro-Tom, are two of these genetic resources. Large-scale sequencing data for ESTs and full-length cDNAs from Micro-Tom continue to be gathered. In conjunction with information on the reference genome sequence of another cultivar, Heinz 1706, the Micro-Tom experimental resources have facilitated comprehensive functional analyses. To enhance the efficiency of acquiring omics information for tomato biology, we have integrated the information on the Micro-Tom experimental resources and the Heinz 1706 genome sequence. We have also inferred gene structure by comparison of sequences between the genome of Heinz 1706 and the transcriptome, which are comprised of Micro-Tom full-length cDNAs and Heinz 1706 RNA-seq data stored in the KaFTom and Sequence Read Archive databases. In order to provide large-scale omics information with streamlined connectivity we have developed and maintain a web database TOMATOMICS (http://bioinf.mind.meiji.ac.jp/tomatomics/). In TOMATOMICS, access to the information on the cDNA clone resources, full-length mRNA sequences, gene structures, expression profiles and functional annotations of genes is available through search functions and the genome browser, which has an intuitive graphical interface.
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Registered trials
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