Evidence map›Paper›PMID 28111073›Full record

ArticleCell2017

Ligand and Target Discovery by Fragment-Based Screening in Human Cells.

Christopher G Parker, Andrea Galmozzi, Yujia Wang, Bruno E Correia, Kenji Sasaki, Christopher M Joslyn, Arthur S Kim, Cullen L Cavallaro, R Michael Lawrence, Stephen R Johnson and 3 more

Open access · greenAbstract read
In one paragraph

Article in Cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 204 papers.

0numbers the graph read from it
0cells of the map it votes in
204citing papers in PubMed
22.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

204 citing papers in PubMed, 452 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Chemical Biology 2025: Highlights From the Ch/Bi145 Course at Caltech.Chembiochem : a European journal of chemical biology · 2026
    Review
  5. Proteomics-Driven Strategies for Proximity-Inducing Drug Discovery.Angewandte Chemie (International ed. in English) · 2026
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Druggability is not static.Nature chemical biology · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Targeting extrachromosomal DNA in human cancers.Nature reviews. Drug discovery · 2026
    Review
  15. Article
  16. Regulation of RNA-binding proteins by small biomolecules.Nature reviews. Molecular cell biology · 2026
    Review
  17. Integrated phenotypic screening and chemical proteomics identifies ETF1 ligands that modulate viral translation and replication.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  18. Review
  19. Article
  20. Article

144 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Christopher G ParkerDepartment of Chemical Physiology, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address: cparker@scripps.edu.
Andrea GalmozziDepartment of Chemical Physiology, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Yujia WangDepartment of Chemical Physiology, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Bruno E CorreiaÉcole Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland.
Kenji SasakiDepartment of Chemical Physiology, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Christopher M JoslynDepartment of Chemical Physiology, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Arthur S KimDepartment of Chemical Physiology, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Cullen L CavallaroResearch and Development, Bristol-Myers Squibb Company, Princeton, NJ 08648, USA.
R Michael LawrenceResearch and Development, Bristol-Myers Squibb Company, Princeton, NJ 08648, USA.
Stephen R JohnsonResearch and Development, Bristol-Myers Squibb Company, Princeton, NJ 08648, USA.
Iñigo NarvaizaThe Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA.
Enrique SaezDepartment of Chemical Physiology, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address: esaez@scripps.edu.
Benjamin F CravattDepartment of Chemical Physiology, The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address: cravatt@scripps.edu.
Scripps Research Institute · USBristol-Myers Squibb (United States) · USÉcole Polytechnique Fédérale de Lausanne · CHSalk Institute for Biological Studies · US

Funding

Chemical Probes for Metabolic Pathway Discovery in Human DiseaseR01CA132630 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI CRAVATT, BENJAMIN F · 2007 to 2018
$5.1M
Identification and Therapeutic Valiation of Adipocyte Serine Hydrolases of MetabR24DK099810 · NIDDK · SCRIPPS RESEARCH INSTITUTE, THE · PI CRAVATT, BENJAMIN F, SAEZ, ENRIQUE · 2013 to 2016
$4.7M
Seahorse XF96 Extracellular Flux AnalyzerS10OD016357 · OD · SCRIPPS RESEARCH INSTITUTE, THE · PI SAEZ, ENRIQUE · 2013 to 2013
$175k
NCI NIH HHS R01 CA132630NIDDK NIH HHS R24 DK099810NIH HHS S10 OD016357
6 · The paper itself

Abstract

Advances in the synthesis and screening of small-molecule libraries have accelerated the discovery of chemical probes for studying biological processes. Still, only a small fraction of the human proteome has chemical ligands. Here, we describe a platform that marries fragment-based ligand discovery with quantitative chemical proteomics to map thousands of reversible small molecule-protein interactions directly in human cells, many of which can be site-specifically determined. We show that fragment hits can be advanced to furnish selective ligands that affect the activity of proteins heretofore lacking chemical probes. We further combine fragment-based chemical proteomics with phenotypic screening to identify small molecules that promote adipocyte differentiation by engaging the poorly characterized membrane protein PGRMC2. Fragment-based screening in human cells thus provides an extensive proteome-wide map of protein ligandability and facilitates the coordinated discovery of bioactive small molecules and their molecular targets.

Indexed as

AdipocytesCell DifferentiationCrystallography, X-RayDrug DiscoveryHigh-Throughput Screening AssaysHumansHydrolasesLigandsMembrane ProteinsOxidoreductasesProtein BindingProteomicsReceptors, ProgesteroneSmall Molecule LibrariesHydrolasesLigandsMembrane ProteinsOxidoreductasesPGRMC2 protein, humanReceptors, ProgesteroneSmall Molecule Librariesadipogenesischemical probeschemical proteomicsFBLDfragment-based ligand discoveryligandsmass spectrometryPGRMC2phenotypic screeningphotoreactivity

Identifiers

PMID28111073
PMCPMC5632530
OpenAlexW2575838842

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.