Evidence map›Paper›PMID 28111018›Full record

ArticleStructure (London, England : 1993)2017

Structural Heterogeneity in Pre-40S Ribosomes.

Matthew C Johnson, Homa Ghalei, Katelyn A Doxtader, Katrin Karbstein, M Elizabeth Stroupe

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Review
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  6. Review
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  14. Assembly factors chaperone ribosomal RNA folding by isolating helical junctions that are prone to misfolding.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Structural and catalytic roles of the human 18The Journal of biological chemistry · 2020
    Article
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  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Matthew C JohnsonDepartment of Biological Science, Institute of Molecular Biophysics, Florida State University, 91 Chieftain Way, Tallahassee, FL 32306, USA.
Homa GhaleiDepartment of Cancer Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Katelyn A DoxtaderDepartment of Cancer Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Katrin KarbsteinDepartment of Cancer Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.
M Elizabeth StroupeDepartment of Biological Science, Institute of Molecular Biophysics, Florida State University, 91 Chieftain Way, Tallahassee, FL 32306, USA. Electronic address: mestroupe@bio.fsu.edu.

Funding

Quality Control in Ribosome Assembly - the Function of Regulatory ProteinsR01GM086451 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KARBSTEIN, KATRIN · 2009 to 2019
$4.8M
Purchase of a FEI Titan Krios for 3-D EMS10RR025080 · NCRR · FLORIDA STATE UNIVERSITY · PI TAYLOR, KENNETH ALLEN · 2008 to 2008
$2.0M
Kinase-mediated assembly of the mRNA entry channel in 40S ribosomesR01GM117093 · NIGMS · SCRIPPS FLORIDA · PI KARBSTEIN, KATRIN · 2016 to 2019
$1.7M
Purchase of a direct electron camera for the Titan-Krios at FSUS10OD018142 · OD · FLORIDA STATE UNIVERSITY · PI TAYLOR, KENNETH ALLEN · 2014 to 2014
$384k
NCRR NIH HHS S10 RR025080NIGMS NIH HHS R01 GM086451NIGMS NIH HHS R01 GM117093NIH HHS S10 OD018142
6 · The paper itself

Abstract

Late-stage 40S ribosome assembly is a highly regulated dynamic process that occurs in the cytoplasm, alongside the full translation machinery. Seven assembly factors (AFs) regulate and facilitate maturation, but the mechanisms through which they work remain undetermined. Here, we present a series of structures of the immature small subunit (pre-40S) determined by three-dimensional (3D) cryoelectron microscopy with 3D sorting to assess the molecule's heterogeneity. These structures demonstrate an extensive structural heterogeneity of interface AFs that likely regulates subunit joining during 40S maturation. We also present structural models for the beak and the platform, two regions where the low resolution of previous studies did not allow for localization of AFs and the rRNA, respectively. These models are supported by biochemical analyses using point variants and suggest that maturation of the 18S 3' end is regulated by dissociation of the AF Dim1 from the subunit interface, consistent with previous biochemical analyses.

Indexed as

Genetic HeterogeneityAmino Acid MotifsBinding SitesCloning, MolecularCryoelectron MicroscopyCrystallography, X-RayEscherichia coliGene ExpressionHumansModels, MolecularNuclear ProteinsProtein BindingProtein Interaction Domains and MotifsProtein Structure, SecondaryRecombinant ProteinsRibonucleoprotein, U5 Small NuclearNOB1 protein, S cerevisiaeNuclear ProteinsPNO1 protein, S cerevisiaeRecombinant ProteinsRibonucleoprotein, U5 Small NuclearRibosomal ProteinsRNA, RibosomalRPS3 protein, humanSaccharomyces cerevisiae ProteinsTsr1 protein, humanTXNL4A protein, humancryo-EMpre-40S ribosomeribosome assemblyribosome biogenesissmall subunit assembly

Identifiers

PMID28111018
PMCPMC5314460

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.