Evidence map›Paper›PMID 28110507›Full record

ArticleCytometry. Part A : the journal of the International Society for Analytical Cytology2017

Computer-assisted quantification of CD3+ T cells in follicular lymphoma.

Fazly S Abas, Arwa Shana'ah, Beth Christian, Robert Hasserjian, Abner Louissaint, Michael Pennell, Berkman Sahiner, Weijie Chen, Muhammad Khalid Khan Niazi, Gerard Lozanski and 1 more

Abstract read
In one paragraph

Article in Cytometry. Part A : the journal of the International Society for Analytical Cytology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Fazly S AbasCenter for e-Health, Faculty of Engineering and Technology, Multimedia University, Melaka, Malaysia.
Arwa Shana'ahDepartment of Pathology, The Ohio State University, Columbus, Ohio.
Beth ChristianDepartment of Internal Medicine, The Ohio State University, Columbus, Ohio.
Robert HasserjianDepartment of Pathology, Massachusetts General Hospital, Boston, Massachusetts.
Abner LouissaintDepartment of Pathology, Massachusetts General Hospital, Boston, Massachusetts.
Michael PennellDivision of Biostatistics, College of Public Health, The Ohio State University, Columbus, Ohio.
Berkman SahinerCenter for Devices and Radiological Health, Food and Drug Administration, Silver Spring, Maryland.
Weijie ChenCenter for Devices and Radiological Health, Food and Drug Administration, Silver Spring, Maryland.
Muhammad Khalid Khan NiaziDepartment of Biomedical Informatics, The Ohio State University, Columbus, Ohio.
Gerard LozanskiDepartment of Pathology, The Ohio State University, Columbus, Ohio.
Metin GurcanDepartment of Biomedical Informatics, The Ohio State University, Columbus, Ohio.

Funding

Pathology Image Informatics Platform for visualization, analysis and managementU24CA199374 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI GURCAN, METIN NAFI, MADABHUSHI, ANANT · 2015 to 2019
$2.9M
Computer-based assessment of tumor microenvironment (TME) in Follicular LymphomaR01CA134451 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI GURCAN, METIN NAFI, LOZANSKI, GERARD · 2009 to 2017
$2.3M
Mesenchynmal stem cells as a protective niche for latent M. tuberculosisR56AI111823 · NIAID · ADA FORSYTH INSTITUTE, INC. · PI BEAMER, GILLIAN L, CAMPOS-NETO, ANTONIO · 2014 to 2014
$619k
NCI NIH HHS R01 CA134451NCI NIH HHS U24 CA199374NIAID NIH HHS R56 AI111823
6 · The paper itself

Abstract

The advance of high resolution digital scans of pathology slides allowed development of computer based image analysis algorithms that may help pathologists in IHC stains quantification. While very promising, these methods require further refinement before they are implemented in routine clinical setting. Particularly critical is to evaluate algorithm performance in a setting similar to current clinical practice. In this article, we present a pilot study that evaluates the use of a computerized cell quantification method in the clinical estimation of CD3 positive (CD3+) T cells in follicular lymphoma (FL). Our goal is to demonstrate the degree to which computerized quantification is comparable to the practice of estimation by a panel of expert pathologists. The computerized quantification method uses entropy based histogram thresholding to separate brown (CD3+) and blue (CD3-) regions after a color space transformation. A panel of four board-certified hematopathologists evaluated a database of 20 FL images using two different reading methods: visual estimation and manual marking of each CD3+ cell in the images. These image data and the readings provided a reference standard and the range of variability among readers. Sensitivity and specificity measures of the computer's segmentation of CD3+ and CD- T cell are recorded. For all four pathologists, mean sensitivity and specificity measures are 90.97 and 88.38%, respectively. The computerized quantification method agrees more with the manual cell marking as compared to the visual estimations. Statistical comparison between the computerized quantification method and the pathologist readings demonstrated good agreement with correlation coefficient values of 0.81 and 0.96 in terms of Lin's concordance correlation and Spearman's correlation coefficient, respectively. These values are higher than most of those calculated among the pathologists. In the future, the computerized quantification method may be used to investigate the relationship between the overall architectural pattern (i.e., interfollicular vs. follicular) and outcome measures (e.g., overall survival, and time to treatment). © 2017 International Society for Advancement of Cytometry.

Indexed as

AlgorithmsAutomation, LaboratoryCD3 ComplexEntropyGene ExpressionHumansImage Processing, Computer-AssistedImmunohistochemistryLymphoma, FollicularPilot ProjectsReproducibility of ResultsSensitivity and SpecificityStaining and LabelingT-LymphocytesCD3 ComplexCD3cell quantificationfollicular lymphoma

Identifiers

PMID28110507
PMCPMC10680104

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.