Evidence map›Paper›PMID 28108474›Full record

ArticleGenes & development2017

The human initiator is a distinct and abundant element that is precisely positioned in focused core promoters.

Long Vo Ngoc, California Jack Cassidy, Cassidy Yunjing Huang, Sascha H C Duttke, James T Kadonaga

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 94 citations in OpenAlex.

  1. Review
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  14. Core promoterome of barley embryo.Computational and structural biotechnology journal · 2024
    Article
  15. Dissecting thebioRxiv : the preprint server for biology · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Long Vo NgocSection of Molecular Biology, University of California at San Diego, La Jolla, California 92093, USA.
California Jack CassidySection of Molecular Biology, University of California at San Diego, La Jolla, California 92093, USA.
Cassidy Yunjing HuangSection of Molecular Biology, University of California at San Diego, La Jolla, California 92093, USA.
Sascha H C DuttkeSection of Molecular Biology, University of California at San Diego, La Jolla, California 92093, USA.
James T KadonagaSection of Molecular Biology, University of California at San Diego, La Jolla, California 92093, USA.
University of California, San Diego · US

Funding

Mechanisms of Eukaryotic Gene RegulationR35GM118060 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI James T. Kadonaga · 2016 to 2026
$7.5M
MECHANISMS OF TRANSCRIPTIONAL REGULATION IN EUKARYOTESR01GM041249 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KADONAGA, JAMES T. · 1989 to 2016
$5.4M
Elucidation of Human TATA-less Transcription NetworksR21HG008781 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KADONAGA, JAMES T. · 2016 to 2017
$388k
NHGRI NIH HHS R21 HG008781NIGMS NIH HHS R01 GM041249NIGMS NIH HHS R35 GM118060
6 · The paper itself

Abstract

DNA sequence signals in the core promoter, such as the initiator (Inr), direct transcription initiation by RNA polymerase II. Here we show that the human Inr has the consensus of BBCA

Indexed as

Transcription Initiation SiteConserved SequenceDNA Mutational AnalysisHumansMCF-7 CellsMutationPromoter Regions, GeneticSequence Homology, Nucleic AcidTATA Boxcore promoterfocused transcriptioninitiatorRNA polymerase IItranscription start site

Identifiers

PMID28108474
PMCPMC5287114
OpenAlexW2578532919

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.