Evidence map›Paper›PMID 28107649›Full record

ArticleMolecular cell2017

RPA Interacts with HIRA and Regulates H3.3 Deposition at Gene Regulatory Elements in Mammalian Cells.

Honglian Zhang, Haiyun Gan, Zhiquan Wang, Jeong-Heon Lee, Hui Zhou, Tamas Ordog, Marc S Wold, Mats Ljungman, Zhiguo Zhang

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 95 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Review
  14. Review
  15. RAD51-mediated R-loop formation acts to repair transcription-associated DNA breaks driving antigenic variation inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. DHX36 maintains genomic integrity by unwinding G-quadruplexes.Genes to cells : devoted to molecular & cellular mechanisms · 2023
    Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

Honglian ZhangDepartments of Pediatrics and Genetics and Development, Institute for Cancer Genetics, Irving Cancer Research Center, College of Surgeons and Physicians, Columbia University, 1130 St. Nicholas Avenue, New York, NY 10032, USA.
Haiyun GanDepartments of Pediatrics and Genetics and Development, Institute for Cancer Genetics, Irving Cancer Research Center, College of Surgeons and Physicians, Columbia University, 1130 St. Nicholas Avenue, New York, NY 10032, USA.
Zhiquan WangCenter for Individualized Medicine, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.
Jeong-Heon LeeCenter for Individualized Medicine, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.
Hui ZhouDepartments of Pediatrics and Genetics and Development, Institute for Cancer Genetics, Irving Cancer Research Center, College of Surgeons and Physicians, Columbia University, 1130 St. Nicholas Avenue, New York, NY 10032, USA.
Tamas OrdogCenter for Individualized Medicine, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.
Marc S WoldDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, IA 52242, USA.
Mats LjungmanDepartments of Radiation Oncology and Environmental Health Sciences, Translational Oncology Program and Center for RNA Biomedicine, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Zhiguo ZhangDepartments of Pediatrics and Genetics and Development, Institute for Cancer Genetics, Irving Cancer Research Center, College of Surgeons and Physicians, Columbia University, 1130 St. Nicholas Avenue, New York, NY 10032, USA. Electronic address: zz2401@cumc.columbia.edu.
Mayo Clinic · USCancer Research Center · USCancer Genetics (United States) · USColumbia University · USUniversity of Iowa · USUniversity of Michigan–Ann Arbor · US

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Christopher K Laubenthal · 2000 to 2026
$70.0M
Mechanisms of Epigenetic inheritanceR35GM118015 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Zhiguo Zhang · 2016 to 2026
$9.5M
Regulation of Nucleosome AssemblyR01GM081838 · NIGMS · MAYO CLINIC ROCHESTER · PI ZHANG, ZHIGUO · 2008 to 2015
$2.4M
The role of a histone H4 phosphorylation in drug resistanceR01CA157489 · NCI · MAYO CLINIC ROCHESTER · PI ZHANG, ZHIGUO · 2012 to 2016
$1.6M
Development and Validation of BruChase-Seq and BrUV-SeqR01HG006786 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LJUNGMAN, MATS · 2012 to 2014
$1.1M
NCI NIH HHS P30 CA086862NCI NIH HHS R01 CA157489NHGRI NIH HHS R01 HG006786NIGMS NIH HHS R01 GM081838NIGMS NIH HHS R35 GM118015
6 · The paper itself

Abstract

The histone chaperone HIRA is involved in depositing histone variant H3.3 into distinct genic regions, including promoters, enhancers, and gene bodies. However, how HIRA deposits H3.3 to these regions remains elusive. Through a short hairpin RNA (shRNA) screening, we identified single-stranded DNA binding protein replication protein A (RPA) as a regulator of the deposition of newly synthesized H3.3 into chromatin. We show that RPA physically interacts with HIRA to form RPA-HIRA-H3.3 complexes, and it co-localizes with HIRA and H3.3 at gene promoters and enhancers. Depletion of RPA1, the largest subunit of the RPA complex, dramatically reduces both HIRA association with chromatin and the deposition of newly synthesized H3.3 at promoters and enhancers and leads to altered transcription at gene promoters. These results support a model whereby RPA, best known for its role in DNA replication and repair, recruits HIRA to promoters and enhancers and regulates deposition of newly synthesized H3.3 to these regulatory elements for gene regulation.

Indexed as

Enhancer Elements, GeneticPromoter Regions, GeneticTranscription, GeneticBinding SitesCell Cycle ProteinsChromatinDNADNA-Binding ProteinsG1 PhaseHEK293 CellsHeLa CellsHistone ChaperonesHistonesHumansProtein BindingProtein Interaction Domains and MotifsCell Cycle ProteinsChromatinDNADNA-Binding ProteinsHIRA protein, humanHistone ChaperonesHistonesReplication Protein ARPA1 protein, humanRPA2 protein, humanRPA3 protein, humanTranscription FactorsenhancerH3.3 depositionHIRAhistone chaperonenucleosome assemblypromoterR-loopRPA

Identifiers

PMID28107649
PMCPMC5460635
OpenAlexW2578371611

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.