Evidence map›Paper›PMID 28106912›Full record

ArticleThe New phytologist2017

The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2.

Nathan C Rockwell, Shelley S Martin, Fay-Wei Li, Sarah Mathews, John Clark Lagarias

Open access · bronzeAbstract read
In one paragraph

Article in The New phytologist, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Cyanobacteriochromes: A Rainbow of Photoreceptors.Annual review of microbiology · 2024
    Review
  6. Article
  7. Elucidating the origins of phycocyanobilin biosynthesis and phycobiliproteins.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Protein-chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  9. Review
  10. TheInternational journal of molecular sciences · 2021
    Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Crystal structure of the first eukaryotic bilin reductaseThe Journal of biological chemistry · 2019
    Article
  16. Article
  17. Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Nathan C RockwellDepartment of Molecular and Cellular Biology, University of California, Davis, CA, 95616, USA.
Shelley S MartinDepartment of Molecular and Cellular Biology, University of California, Davis, CA, 95616, USA.
Fay-Wei LiDepartment of Biology, Duke University, Durham, NC, 27708, USA.
Sarah MathewsCSIRO National Research Collections Australia, Australian National Herbarium, Canberra, ACT, 2601, Australia.
John Clark LagariasDepartment of Molecular and Cellular Biology, University of California, Davis, CA, 95616, USA.ORCID http://orcid.org/0000-0002-2093-0403
University of California, Davis · USAustralian National Herbarium · AUDuke University · US

Funding

MOLECULAR MECHANISMS OF PHYTOCHROME SIGNALINGR01GM068552 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI LAGARIAS, JOHN CLARK · 2003 to 2020
$5.3M
NIGMS NIH HHS R01 GM068552
6 · The paper itself

Abstract

Land plant phytochromes perceive red and far-red light to control growth and development, using the linear tetrapyrrole (bilin) chromophore phytochromobilin (PΦB). Phytochromes from streptophyte algae, sister species to land plants, instead use phycocyanobilin (PCB). PCB and PΦB are synthesized by different ferredoxin-dependent bilin reductases (FDBRs): PΦB is synthesized by HY2, whereas PCB is synthesized by PcyA. The pathway for PCB biosynthesis in streptophyte algae is unknown. We used phylogenetic analysis and heterologous reconstitution of bilin biosynthesis to investigate bilin biosynthesis in streptophyte algae. Phylogenetic results suggest that PcyA is present in chlorophytes and prasinophytes but absent in streptophytes. A system reconstituting bilin biosynthesis in Escherichia coli was modified to utilize HY2 from the streptophyte alga Klebsormidium flaccidum (KflaHY2). The resulting bilin was incorporated into model cyanobacterial photoreceptors and into phytochrome from the early-diverging streptophyte alga Mesostigma viride (MvirPHY1). All photoreceptors tested incorporate PCB rather than PΦB, indicating that KflaHY2 is sufficient for PCB synthesis without any other algal protein. MvirPHY1 exhibits a red-far-red photocycle similar to those seen in other streptophyte algal phytochromes. These results demonstrate that streptophyte algae use HY2 to synthesize PCB, consistent with the hypothesis that PΦB synthesis arose late in HY2 evolution.

Indexed as

Algal ProteinsChlorophytaEscherichia coliFerredoxinsOxidoreductasesPhycobilinsPhycocyaninPhylogenyPhytochromeProtein DenaturationAlgal ProteinsFerredoxinsOxidoreductasesPhycobilinsPhycocyaninphycocyanobilinPhytochromeaquatic photosynthesisbiliverdin IXαMesotaenium caldariorumphotoreceptorspectral tuningterrestrial colonizationtetrapyrrole biosynthesis

Identifiers

PMID28106912
PMCPMC5388591
OpenAlexW2577756588

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.