Evidence map›Paper›PMID 28105942›Full record

ArticleBMC plant biology2016

The occurrence of spring forms in tetraploid Timopheevi wheat is associated with variation in the first intron of the VRN-A1 gene.

Andrey Borisovich Shcherban, Aleksandra Aleksandrovna Schichkina, Elena Artemovna Salina

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Review
  3. Genetic diversity, distribution and domestication history of the neglected GGATAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  4. Contemplation on wheat vernalization.Frontiers in plant science · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Andrey Borisovich ShcherbanThe Federal Research Center "Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences", Lavrentiev ave. 10, Novosibirsk, 630090, Russia. atos@bionet.nsc.ru.
Aleksandra Aleksandrovna SchichkinaInstitute of General Genetics of the Russian Academy of Sciences, Gubkina str., 3, Moscow, 119991, Russia.
Elena Artemovna SalinaThe Federal Research Center "Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences", Lavrentiev ave. 10, Novosibirsk, 630090, Russia.
Institute of Cytology and Genetics · RUVavilov Institute of General Genetics · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTriticum araraticum and Triticum timopheevii are tetraploid species of the Timopheevi group. The former includes both winter and spring forms with a predominance of winter forms, whereas T. timopheevii is considered a spring species. In order to clarify the origin of the spring growth habit in T. timopheevii, allelic variability of the VRN-1 gene was investigated in a set of accessions of both tetraploid species, together with the diploid species Ae. speltoides, presumed donor of the G genome to these tetraploids.

resultsThe promoter region of the VRN-A1 locus in all studied tetraploid accessions of both T. araraticum and T. timopheevii represents the previously described allele VRN-A1f with a 50 bp deletion near the start codon. Three additional alleles were identified namely, VRN-A1f-del, VRN-A1f-ins and VRN-A1f-del/ins, which contained large mutations in the first (1

conclusionsAmong accessions of T. araraticum, the preferentially winter predecessor of T. timopheevii, two large mutations were found in both VRN-A1 and VRN-G1 loci (VRN-A1f-del and VRN-G1a) that were found to have no effect on vernalization requirements. Spring tetraploid T. timopheevii had one VRN-1 allele in common for two species (VRN-G1a), and two that were specific (VRN-A1f-ins, VRN-A1f-del/ins). The latter alleles include mutations in the 1

Indexed as

AllelesGenetic VariationPromoter Regions, GeneticIntronsPhylogenyPlant ProteinsPoaceaeSeasonsSequence Analysis, DNASpecies SpecificityTetraploidyTriticumPlant ProteinsAegilopsAllelic variationFirst intronPromoterTriticumVernalizationVRN-1 gene

Identifiers

PMID28105942
PMCPMC5123382
OpenAlexW2554505565

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.