Evidence map›Paper›PMID 28103687›Full record

ArticleACS chemical biology2017

Live Cell Imaging of Endogenous mRNA Using RNA-Based Fluorescence "Turn-On" Probe.

Wei Qiang Ong, Y Rose Citron, Sayaka Sekine, Bo Huang

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Article
  3. Turn-on RNA Mango Beacons forRNA (New York, N.Y.) · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Nucleic-Acid Structures as Intracellular Probes for Live Cells.Advanced materials (Deerfield Beach, Fla.) · 2020
    Review
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Wei Qiang OngDepartment of Pharmaceutical Chemistry, University of California, San Francisco , San Francisco, California 94143, United States.
Y Rose CitronGraduate Program of Biophysics, University of California, San Francisco , San Francisco, California 94143, United States.
Sayaka SekineDepartment of Pharmaceutical Chemistry, University of California, San Francisco , San Francisco, California 94143, United States.
Bo HuangDepartment of Pharmaceutical Chemistry, University of California, San Francisco , San Francisco, California 94143, United States.ORCID 0000-0003-1704-4141
University of California, San Francisco · US

Funding

STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008284 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KORTEMME, TANJA · 1988 to 2022
$10.1M
Transcellular epigenetic regulation by ex-small RNA in C. elegantU19CA179512 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BLELLOCH, ROBERT · 2013 to 2017
$7.4M
Solving macromolecular complex architecture in situ by super-resolution microscopDP2OD008479 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, BO · 2011 to 2011
$2.3M
NCI NIH HHS U19 CA179512NIGMS NIH HHS T32 GM008284NIH HHS DP2 OD008479
6 · The paper itself

Abstract

Messenger RNA (mRNA) plays a critical role in cellular growth and development. However, there have been limited methods available to visualize endogenous mRNA in living cells with ease. We have designed RNA-based fluorescence "turn-on" probes that target mRNA by fusing an unstable form of Spinach with target-complementary sequences. These probes have been demonstrated to be selective, stable, and capable of targeting various mRNAs for live E. coli imaging.

Indexed as

Aptamers, NucleotideBenzyl CompoundsEscherichia coliFluorescent DyesG-QuadruplexesImidazolinesNucleic Acid HybridizationRNA, MessengerSpectrometry, Fluorescence3,5-difluoro-4-hydroxybenzylidene imidazolinoneAptamers, NucleotideBenzyl CompoundsFluorescent DyesImidazolinesRNA, Messenger

Identifiers

PMID28103687
PMCPMC5460623
OpenAlexW2559648576

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.