Evidence map›Paper›PMID 28103138›Full record

ArticleCell cycle (Georgetown, Tex.)2017

Discovery of a novel splice variant of Fcar (CD89) unravels sequence segments necessary for efficient secretion: A story of bad signal peptides and good ones that nevertheless do not make it.

Wai-Heng Lua, Wei-Li Ling, Chinh Tran-To Su, Joshua Yi Yeo, Chandra Shekhar Verma, Birgit Eisenhaber, Frank Eisenhaber, Samuel Ken-En Gan

Abstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Wai-Heng Luaa Bioinformatics Institute, Agency for Science, Technology, and Research (A*STAR) , Singapore.
Wei-Li Linga Bioinformatics Institute, Agency for Science, Technology, and Research (A*STAR) , Singapore.
Chinh Tran-To Sua Bioinformatics Institute, Agency for Science, Technology, and Research (A*STAR) , Singapore.
Joshua Yi Yeoa Bioinformatics Institute, Agency for Science, Technology, and Research (A*STAR) , Singapore.
Chandra Shekhar Vermaa Bioinformatics Institute, Agency for Science, Technology, and Research (A*STAR) , Singapore.
Birgit Eisenhabera Bioinformatics Institute, Agency for Science, Technology, and Research (A*STAR) , Singapore.
Frank Eisenhabera Bioinformatics Institute, Agency for Science, Technology, and Research (A*STAR) , Singapore.
Samuel Ken-En Gana Bioinformatics Institute, Agency for Science, Technology, and Research (A*STAR) , Singapore.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The IgA receptor, Fcar (CD89) consists of 5 sequence segments: 2 segments (S1, S2) forming the potential signal peptide, 2 extracellular EC domains that include the IgA binding site, and the transmembrane and cytoplasmic tail (TM/C) region. Numerous Fcar splice variants have been reported with various combinations of the sequence segments mentioned above. Here, we report a novel splice variant termed variant APD isolated from a healthy volunteer that lacks only the IgA-binding EC1 domain. Despite possessing the complete signal peptide S1+S2, the variant APD is only found in the intracellular space whereas the wild-type variant 1 is efficiently secreted and variant 4 leaks to the extracellular space. Further mutational experiments involving signal peptide replacements, cleavage site modifications, and studies on alternative isoforms demonstrate that despite the completeness of the signal peptide motif, the presence of the EC1 domain is essential for efficient extracellular export.

Indexed as

Secretory PathwayAlternative SplicingAmino Acid SequenceAntigens, CDExtracellular SpaceFlow CytometryGreen Fluorescent ProteinsHEK293 CellsHumansMicroscopy, ConfocalPolymerase Chain ReactionProtein Sorting SignalsProtein TransportReceptors, FcSequence DeletionAntigens, CDFc(alpha) receptorGreen Fluorescent ProteinsProtein Sorting SignalsReceptors, FcCD89extracellular localizationFcarIgAsplice variants

Identifiers

PMID28103138
PMCPMC5351921

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.