Evidence map›Paper›PMID 28102759›Full record

ArticleRNA biology2017

Antisense transcription of the myotonic dystrophy locus yields low-abundant RNAs with and without (CAG)n repeat.

Anke E E G Gudde, Simon J van Heeringen, Amanda I de Oude, Ingeborg D G van Kessel, Joseph Estabrook, Eric T Wang, Bé Wieringa, Derick G Wansink

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Local Non-Coding Regulatory Elements in Muscular Dystrophies.International journal of molecular sciences · 2025
    Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Regulatory Potential of Competing Endogenous RNAs in Myotonic Dystrophies.International journal of molecular sciences · 2021
    Review
  13. Review
  14. Review
  15. HNRNPA1-induced spliceopathy in a transgenic mouse model of myotonic dystrophy.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Article
  17. CRISPR/Cas Applications in Myotonic Dystrophy: Expanding Opportunities.International journal of molecular sciences · 2019
    Review
  18. Therapeutic Genome Editing for Myotonic Dystrophy Type 1 Using CRISPR/Cas9.Molecular therapy : the journal of the American Society of Gene Therapy · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Anke E E G Guddea Radboud University Medical Center , Department of Cell Biology , Nijmegen , The Netherlands.
Simon J van Heeringenb Radboud University, Faculty of Science , Department of Molecular Developmental Biology, Radboud Institute for Molecular Life Sciences , Nijmegen , The Netherlands.ORCID 0000-0002-0411-3219
Amanda I de Oudea Radboud University Medical Center , Department of Cell Biology , Nijmegen , The Netherlands.ORCID 0000-0001-8315-3982
Ingeborg D G van Kessela Radboud University Medical Center , Department of Cell Biology , Nijmegen , The Netherlands.
Joseph Estabrookc Department of Molecular Genetics and Microbiology , Center for Neurogenetics, University of Florida College of Medicine , Gainesville , FL , USA.
Eric T Wangc Department of Molecular Genetics and Microbiology , Center for Neurogenetics, University of Florida College of Medicine , Gainesville , FL , USA.
Bé Wieringaa Radboud University Medical Center , Department of Cell Biology , Nijmegen , The Netherlands.
Derick G Wansinka Radboud University Medical Center , Department of Cell Biology , Nijmegen , The Netherlands.
Radboud University Nijmegen · NLUniversity of Florida · US

Funding

Ppst-transcriptional regulation of gene expression in neuromuscular diseaseDP5OD017865 · OD · UNIVERSITY OF FLORIDA · PI WANG, ERIC T · 2013 to 2017
$2.0M
NIH HHS DP5 OD017865
6 · The paper itself

Abstract

The unstable (CTG·CAG)n trinucleotide repeat in the myotonic dystrophy type 1 (DM1) locus is bidirectionally transcribed from genes with terminal overlap. By transcription in the sense direction, the DMPK gene produces various alternatively spliced mRNAs with a (CUG)n repeat in their 3' UTR. Expression in opposite orientation reportedly yields (CAG)n-repeat containing RNA, but both structure and biologic significance of this antisense gene (DM1-AS) are largely unknown. Via a combinatorial approach of computational and experimental analyses of RNA from unaffected individuals and DM1 patients we discovered that DM1-AS spans >6 kb, contains alternative transcription start sites and uses alternative polyadenylation sites up- and downstream of the (CAG)n repeat. Moreover, its primary transcripts undergo alternative splicing, whereby the (CAG)n segment is removed as part of an intron. Thus, in patients a mixture of DM1-AS RNAs with and without expanded (CAG)n repeat are produced. DM1-AS expression appears upregulated in patients, but transcript abundance remains very low in all tissues analyzed. Our data suggest that DM1-AS transcripts belong to the class of long non-coding RNAs. These and other biologically relevant implications for how (CAG)n-expanded transcripts may contribute to DM1 pathology can now be explored experimentally.

Indexed as

Trinucleotide Repeat Expansion3' Untranslated RegionsAdolescentAlternative SplicingCase-Control StudiesCell LineComputational BiologyHumansMaleMyotonic DystrophyMyotonin-Protein KinaseOpen Reading FramesPolyadenylationRNA, AntisenseRNA, Long NoncodingRNA, Messenger3' Untranslated RegionsDMPK protein, humanMyotonin-Protein KinaseRNA, AntisenseRNA, Long NoncodingRNA, MessengerAntisense RNAbidirectional transcriptionlong noncoding RNAlow-abundant RNAmicrosatellite instabilitymyotonic dystrophyRAN translationtriplet repeat expansion

Identifiers

PMID28102759
PMCPMC5711456
OpenAlexW2573786618

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.