ArticleFrontiers in plant science2016
New Candidate Genes Affecting Rice Grain Appearance and Milling Quality Detected by Genome-Wide and Gene-Based Association Analyses.
Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
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Who cites it
46 citing papers in PubMed.
- Superior haplotypes for transforming crop breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- Genome-Wide Association Mapping and Integrated Transcriptomic-Genomic Analysis Reveal Candidate Genes for Grain Transparency in Rice.International journal of molecular sciences · 2026Article
- Local Haplotyping Analysis for Flowering Time in Soybean Using Crosshap.Methods in molecular biology (Clifton, N.J.) · 2026Article
- Multi-model genome-wide association studies identify stable QTLs and candidate genes for lodging resistance inFrontiers in plant science · 2026Article
- A Study on the Application of COFoods (Basel, Switzerland) · 2025Article
- Rice QTL hotspots related with seed grain size, shape, weight, and color based on genome wide association study and linkage mapping.Scientific reports · 2025Article
- The Impact ofPlants (Basel, Switzerland) · 2025Article
- Comprehensive GWAS and Transcriptome Analysis Discovered Candidate Gene Associated with Starch Pasting Properties of Temperate japonica rice (Oryza sativa L.).Rice (New York, N.Y.) · 2025Article
- Local haplotyping reveals insights into the genetic control of flowering time variation in wild and domesticated soybean.The plant genome · 2024Article
- Article
- The elite eating quality alleles WxPlant biotechnology journal · 2024Article
- Identifying the Quantitative Trait Locus and Candidate Genes of Traits Related to Milling Quality in Rice via a Genome-Wide Association Study.Plants (Basel, Switzerland) · 2024Article
- Identification of reliable QTLs and designed QTL breeding for grain shape and milling quality in the reciprocal introgression lines in rice.BMC plant biology · 2024Article
- Mapping of qChalk1 controlling grain chalkiness in japonica rice.Molecular biology reports · 2023Article
- Molecular mapping and characterization of QTLs for grain quality traits in a RIL population of US rice under high nighttime temperature stress.Scientific reports · 2023Article
- Genome-Wide Association Study of Rice Grain Shape and Chalkiness in a Worldwide Collection of Xian Accessions.Plants (Basel, Switzerland) · 2023Article
- Multi-model genome-wide association studies for appearance quality in rice.Frontiers in plant science · 2023Article
- Genome-wide association study of fiber yield-related traits uncovers the novel genomic regions and candidate genes in Indian upland cotton (Frontiers in plant science · 2023Article
- Genome-wide association mapping and gene expression analysis reveal candidate genes for grain chalkiness in rice.Frontiers in plant science · 2023Article
- An overview of genome-wide association mapping studies in Poaceae species (model crops: wheat and rice).Molecular biology reports · 2022Review
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Appearance and milling quality are two crucial properties of rice grains affecting its market acceptability. Understanding the genetic base of rice grain quality could considerably improve the high quality breeding. Here, we carried out an association analysis to identify QTL affecting nine rice grain appearance and milling quality traits using a diverse panel of 258 accessions selected from 3K Rice Genome Project and evaluated in two environments Sanya and Shenzhen. Genome-wide association analyses using 22,488 high quality SNPs identified 72 QTL affecting the nine traits. Combined gene-based association and haplotype analyses plus functional annotation allowed us to shortlist 19 candidate genes for seven important QTL regions affecting the grain quality traits, including two cloned genes (
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