ArticleGenetics2017
Efficient Estimation of Realized Kinship from Single Nucleotide Polymorphism Genotypes.
Article in Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.
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Who cites it
28 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Population genetic considerations for using biobanks as international resources in the pandemic era and beyond.BMC genomics · 2021Pooled it
- Forest tree breeding using genomic Markov causal models: a new approach to genomic tree breeding improvement.Heredity · 2025Article
- Estimation of inbreeding and kinship coefficients via latent identity-by-descent states.Bioinformatics (Oxford, England) · 2024Article
- FiMAP: A fast identity-by-descent mapping test for biobank-scale cohorts.PLoS genetics · 2023Article
- Genetic association models are robust to common population kinship estimation biases.Genetics · 2023Article
- A fast linkage method for population GWAS cohorts with related individuals.Genetic epidemiology · 2023Article
- Genomic selection for agronomic traits in a winter wheat breeding program.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- An unbiased kinship estimation method for genetic data analysis.BMC bioinformatics · 2022Article
- Privacy-aware estimation of relatedness in admixed populations.Briefings in bioinformatics · 2022Article
- Comparing heritability estimators under alternative structures of linkage disequilibrium.G3 (Bethesda, Md.) · 2022Article
- Robust fingerprinting of genomic databases.Bioinformatics (Oxford, England) · 2022Article
- Population Structure and Relatedness for Genome-Wide Association Studies.Methods in molecular biology (Clifton, N.J.) · 2022Article
- Deep neural networks for genomic prediction do not estimate marker effects.The plant genome · 2021Article
- Single-step genomic prediction of Eucalyptus dunnii using different identity-by-descent and identity-by-state relationship matrices.Heredity · 2021Article
- locStra: Fast analysis of regional/global stratification in whole-genome sequencing studies.Genetic epidemiology · 2021Article
- Estimating FST and kinship for arbitrary population structures.PLoS genetics · 2021Article
- Article
- Development and validation of a RAD-Seq target-capture based genotyping assay for routine application in advanced black tiger shrimp (Penaeus monodon) breeding programs.BMC genomics · 2020Article
- Heritability of interpack aggression in a wild pedigreed population of North American grey wolves.Molecular ecology · 2020Article
- GPU empowered pipelines for calculating genome-wide kinship matrices with ultra-high dimensional genetic variants and facilitating 1D and 2D GWAS.NAR genomics and bioinformatics · 2020Article
Corrections and comments
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Authors and funding
3 authors.
Funding
Abstract
Realized kinship is a key statistic in analyses of genetic data involving relatedness of individuals or structure of populations. There are several estimators of kinship that make use of dense SNP genotypes. We introduce a class of estimators, of which some existing estimators are special cases. Within this class, we derive properties of the estimators and determine an optimal estimator. Additionally, we introduce an alternative marker weighting that takes allelic associations [linkage disequilibrium (LD)] into account, and apply this weighting to several estimators. In a simulation study, we show that improved estimators are obtained (1) by optimal weighting of markers, (2) by taking physical contiguity of genome into account, and (3) by weighting on the basis of LD.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.