Evidence map›Paper›PMID 28100489›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

TALE-induced bHLH transcription factors that activate a pectate lyase contribute to water soaking in bacterial spot of tomato.

Allison R Schwartz, Robert Morbitzer, Thomas Lahaye, Brian J Staskawicz

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
23.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 138 citations in OpenAlex.

  1. Review
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  9. A single-nucleotide insertion in Rxp confers durable resistance to bacterial pustule in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
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  15. Extracellular niche establishment by plant pathogens.Nature reviews. Microbiology · 2024
    Review
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  18. Characteristics and Pathogenicity ofPlants (Basel, Switzerland) · 2023
    Article
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  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Allison R SchwartzDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3120.
Robert MorbitzerDepartment of General Genetics, Center of Plant Molecular Biology, University of Tübingen, D-72076 Tubingen, Germany.
Thomas LahayeDepartment of General Genetics, Center of Plant Molecular Biology, University of Tübingen, D-72076 Tubingen, Germany.
Brian J StaskawiczDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3120; stask@berkeley.edu.
University of California, Berkeley · USUniversity of Tübingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

AvrHah1 [avirulence (avr) gene homologous to avrBs3 and hax2, no. 1] is a transcription activator-like (TAL) effector (TALE) in Xanthomonas gardneri that induces water-soaked disease lesions on fruits and leaves during bacterial spot of tomato. We observe that water from outside the leaf is drawn into the apoplast in X. gardneri-infected, but not X. gardneriΔavrHah1 (XgΔavrHah1)-infected, plants, conferring a dark, water-soaked appearance. The pull of water can facilitate entry of additional bacterial cells into the apoplast. Comparing the transcriptomes of tomato infected with X. gardneri vs. XgΔavrHah1 revealed the differential up-regulation of two basic helix-loop-helix (bHLH) transcription factors with predicted effector binding elements (EBEs) for AvrHah1. We mined our RNA-sequencing data for differentially up-regulated genes that could be direct targets of the bHLH transcription factors and therefore indirect targets of AvrHah1. We show that two pectin modification genes, a pectate lyase and pectinesterase, are targets of both bHLH transcription factors. Designer TALEs (dTALEs) for the bHLH transcription factors and the pectate lyase, but not for the pectinesterase, complement water soaking when delivered by XgΔavrHah1 By perturbing transcriptional networks and/or modifying the plant cell wall, AvrHah1 may promote water uptake to enhance tissue damage and eventual bacterial egression from the apoplast to the leaf surface. Understanding how disease symptoms develop may be a useful tool for improving the tolerance of crops from damaging disease lesions.

Indexed as

Bacterial ProteinsBasic Helix-Loop-Helix ProteinsCapsicumEnzyme ActivationGene Expression Regulation, BacterialGene Expression Regulation, PlantNicotianaPhenotypePlant DiseasesPlant LeavesPolysaccharide-LyasesSolanum lycopersicumTranscription FactorsUp-RegulationVirulenceWaterBacterial ProteinsBasic Helix-Loop-Helix Proteinspectate lyasePolysaccharide-LyasesTranscription FactorsWaterTAL effectorwater soakingXanthomonas bacterial spot

Identifiers

PMID28100489
PMCPMC5293091
OpenAlexW2579274099

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.