Evidence map›Paper›PMID 28099933›Full record

ArticleOncotarget2017

Loss of maternal chromosome 11 is a signature event in SDHAF2, SDHD, and VHL-related paragangliomas, but less significant in SDHB-related paragangliomas.

Attje S Hoekstra, Erik F Hensen, Ekaterina S Jordanova, Esther Korpershoek, Anouk Na van der Horst-Schrivers, Cees Cornelisse, Eleonora P M Corssmit, Frederik J Hes, Jeroen C Jansen, Henricus P M Kunst and 6 more

Abstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Genetic changes in theFrontiers in endocrinology · 2024
    Article
  3. Review
  4. Comprehensive Genetic Study of Malignant Cervical Paraganglioma.International journal of molecular sciences · 2023
    Article
  5. TheInternational journal of molecular sciences · 2022
    Article
  6. Somatic Mutation Profiling in Head and Neck Paragangliomas.The Journal of clinical endocrinology and metabolism · 2022
    Article
  7. Incomplete penetrance of a novel SDHD variation causing familial head and neck paraganglioma.Clinical otolaryngology : official journal of ENT-UK ; official journal of Netherlands Society for Oto-Rhino-Laryngology & Cervico-Facial Surgery · 2021
    Article
  8. Review
  9. Article
  10. Advances in adrenal tumors 2018.Endocrine-related cancer · 2018
    Review
  11. Review
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Attje S HoekstraDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Erik F HensenDepartment of Otolaryngology/Head and Neck Surgery, VU University Medical Center, Amsterdam, The Netherlands.
Ekaterina S JordanovaDepartment of Pathology, Leiden University Medical Center, Leiden, The Netherlands.
Esther KorpershoekDepartment of Pathology, Josephine Nefkens Institute, Erasmus Medical Center Rotterdam, Rotterdam, The Netherlands.
Anouk Na van der Horst-SchriversDepartment of Endocrinology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Cees CornelisseDepartment of Pathology, Leiden University Medical Center, Leiden, The Netherlands.
Eleonora P M CorssmitDepartment of Endocrinology and Metabolic Diseases, Leiden University Medical Center, Leiden, The Netherlands.
Frederik J HesDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Jeroen C JansenDepartment of Otorhinolaryngology, Leiden University Medical Center, Leiden, The Netherlands.
Henricus P M KunstDepartment of Otorhinolaryngology, Head and Neck Surgery, Radboud University Medical Centre, Nijmegen, The Netherlands.
Henri J L M TimmersDepartment of Medicine, Division of Endocrinology, Radboud University Medical Centre, Nijmegen, The Netherlands.
Adrian BatemanDepartment of Cellular Pathology, University Hospital Southampton, Southampton, UK.
Diana EcclesUniversity of Southampton School of Medicine, Cancer Sciences Division, Somers Cancer Research Building, Southampton, UK.
Judith V M G BovéeDepartment of Pathology, Leiden University Medical Center, Leiden, The Netherlands.
Peter DevileeDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Jean-Pierre BayleyDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Germline mutations in the succinate dehydrogenase (SDHA, SDHB, SDHC, SDHD, SDHAF2) or Von Hippel-Lindau (VHL) genes cause hereditary paraganglioma/pheochromocytoma. While SDHB (1p36) and VHL (3p25) are associated with autosomal dominant disease, SDHD (11q23) and SDHAF2 (11q13) show a remarkable parent-of-origin effect whereby tumor formation is almost completely dependent on paternal transmission of the mutant allele. Loss of the entire maternal copy of chromosome 11 occurs frequently in SDHD-linked tumors, and has been suggested to be the basis for this typical inheritance pattern.Using fluorescent in situ hybridization, microsatellite marker and SNP array analysis, we demonstrate that loss of the entire copy of chromosome 11 is also frequent in SDHAF2-related PGLs, occurring in 89% of tumors. Analysis of two imprinted differentially methylated regions (DMR) in 11p15, H19-DMR and KvDMR, showed that this loss always affected the maternal copy of chromosome 11. Likewise, loss of maternal chromosome 11p15 was demonstrated in 85% of SDHD and 75% of VHL-related PGLs/PCCs. By contrast, both copies of chromosome 11 were found to be retained in 62% of SDHB-mutated PGLs/PCCs, while only 31% showed loss of maternal chromosome 11p15. Genome-wide copy number analysis revealed frequent loss of 1p in SDHB mutant tumors and show greater genomic instability compared to SDHD and SDHAF2.These results show that loss of the entire copy of maternal chromosome 11 is a highly specific and statistically significant event in SDHAF2, SDHD and VHL-related PGLs/PCCs, but is less significant in SDHB-mutated tumors, suggesting that these tumors have a distinct genetic etiology.

Indexed as

AllelesChromosomes, Human, Pair 11FemaleGerm-Line MutationHumansLoss of HeterozygosityMitochondrial ProteinsParagangliomaSuccinate DehydrogenaseVon Hippel-Lindau Tumor Suppressor ProteinMitochondrial ProteinsSDHAF2 protein, humanSDHB protein, humanSuccinate DehydrogenaseVHL protein, humanVon Hippel-Lindau Tumor Suppressor Proteinloss of heterozygosityparagangliomapheochromocytomasuccinate dehydrogenaseVon Hippel-Lindau

Identifiers

PMID28099933
PMCPMC5362423

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.