Evidence map›Paper›PMID 28099855›Full record

ArticleCell reports2017

Primary Cell Culture of Live Neurosurgically Resected Aged Adult Human Brain Cells and Single Cell Transcriptomics.

Jennifer M Spaethling, Young-Ji Na, Jaehee Lee, Alexandra V Ulyanova, Gordon H Baltuch, Thomas J Bell, Steven Brem, H Isaac Chen, Hannah Dueck, Stephen A Fisher and 13 more

Abstract read
In one paragraph

Article in Cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Monitoring Autophagy in Human Aging: Key Cell Models and Insights.Frontiers in bioscience (Landmark edition) · 2025
    Review
  6. Review
  7. Article
  8. Lipidome atlas of the adult human brain.Nature communications · 2024
    Article
  9. Article
  10. Article
  11. Review
  12. β-Estradiol 17-acetate enhances theNeural regeneration research · 2023
    Article
  13. Article
  14. Decoding microRNAs in autism spectrum disorder.Molecular therapy. Nucleic acids · 2022
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Jennifer M SpaethlingDepartment of Pharmacology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Young-Ji NaDepartment of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA.
Jaehee LeeDepartment of Pharmacology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Alexandra V UlyanovaDepartment of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Gordon H BaltuchDepartment of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Thomas J BellDepartment of Pharmacology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Steven BremDepartment of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
H Isaac ChenDepartment of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Hannah DueckDepartment of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA.
Stephen A FisherDepartment of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA.
Marcela P GarciaDepartment of Pharmacology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Mugdha KhaladkarDepartment of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA.
David K KungDepartment of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Timothy H LucasDepartment of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Donald M O'RourkeDepartment of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Derek StefanikDepartment of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA.
Jinhui WangDepartment of Pharmacology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
John A WolfDepartment of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Tamas BartfaiDepartment of Neurochemistry, Stockholm University, Stockholm 106 91, Sweden.
M Sean GradyDepartment of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Jai-Yoon SulDepartment of Pharmacology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Junhyong KimDepartment of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA.
James H EberwineDepartment of Pharmacology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address: eberwine@upenn.edu.

Funding

Role of Single Cell mRNA Variation in Systems Associated Electrically Excitable CU01MH098953 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI EBERWINE, JAMES H, KIM, JUNHYONG · 2012 to 2016
$11.4M
Nuclear pre-mRNA analysis of single cells in brain sliceR33MH106637 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI SUL, JAI-YOON · 2014 to 2016
$1.2M
NIMH NIH HHS R33 MH106637NIMH NIH HHS U01 MH098953
6 · The paper itself

Abstract

Investigation of human CNS disease and drug effects has been hampered by the lack of a system that enables single-cell analysis of live adult patient brain cells. We developed a culturing system, based on a papain-aided procedure, for resected adult human brain tissue removed during neurosurgery. We performed single-cell transcriptomics on over 300 cells, permitting identification of oligodendrocytes, microglia, neurons, endothelial cells, and astrocytes after 3 weeks in culture. Using deep sequencing, we detected over 12,000 expressed genes, including hundreds of cell-type-enriched mRNAs, lncRNAs and pri-miRNAs. We describe cell-type- and patient-specific transcriptional hierarchies. Single-cell transcriptomics on cultured live adult patient derived cells is a prime example of the promise of personalized precision medicine. Because these cells derive from subjects ranging in age into their sixties, this system permits human aging studies previously possible only in rodent systems.

Indexed as

TranscriptomeAdultAgedBrainCells, CulturedFemaleHumansMaleMicrogliaMicroRNAsMiddle AgedNeuronsOligodendrogliaPrincipal Component AnalysisRNA, Long NoncodingRNA, MessengerMicroRNAsRNA, Long NoncodingRNA, Messengeradultagedastrocyteendothelial cellhumanmicroglianeuronprimary cellsingle celltranscriptome

Identifiers

PMID28099855
PMCPMC5316103

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.