Evidence map›Paper›PMID 28096535›Full record

Trial reportLeukemia2017

Genetics of ancestry-specific risk for relapse in acute lymphoblastic leukemia.

S E Karol, E Larsen, C Cheng, X Cao, W Yang, L B Ramsey, C A Fernandez, J R McCorkle, S W Paugh, R J Autry and 13 more

Registry-linked trialOpen access · greenAbstract readMulticenter StudyRandomized Controlled Trial
In one paragraph

Trial report in Leukemia, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00137111 (Total XV - Total Therapy Study XV for Newly Diagnosed Patients With Acute Lymphoblastic Leukemia), which is not on this map. Cited by 22 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 2 pooled it
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00137111 phase3completednot on this map

Total XV - Total Therapy Study XV for Newly Diagnosed Patients With Acute Lymphoblastic Leukemia

TypeinterventionalSponsorSt. Jude Children's Research HospitalRan2000 to 2014Enrolled501ConditionsLymphoblastic Leukemia, AcuteArmsPrednisone, Dexamethasone, Vincristine, Daunorubicin, Doxorubicin, L-asparaginase, PEG-L-asparaginase, Erwinia asparaginase, Methotrexate, Cyclophosphamide, Cytarabine, Etoposide, Mercaptopurine, Imatinib, chemotherapy, intrathecal chemotherapy
3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 2 syntheses or guidelines pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Trial
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. The Biology of B-Progenitor Acute Lymphoblastic Leukemia.Cold Spring Harbor perspectives in medicine · 2020
    Review
  15. Pharmacogenetics of asparaginase in acute lymphoblastic leukemia.Cancer drug resistance (Alhambra, Calif.) · 2019
    Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 1 country.

S E KarolComprehensive Cancer Center, St Jude Children's Research Hospital, Memphis, TN, USA.
E LarsenDepartment of Pediatrics, Maine Medical Center, Portland, ME, USA.
C ChengDepartment of Biostatistics, St Jude Children's Research Hospital, Memphis, TN, USA.
X CaoDepartment of Biostatistics, St Jude Children's Research Hospital, Memphis, TN, USA.
W YangDepartment of Pharmaceutical Sciences, St Jude Children's Research Hospital, Memphis, TN, USA.
L B RamseyDepartment of Pharmacy Research, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
C A FernandezDepartment of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
J R McCorkleDepartment of Pharmaceutical Sciences, St Jude Children's Research Hospital, Memphis, TN, USA.
S W PaughDepartment of Pharmaceutical Sciences, St Jude Children's Research Hospital, Memphis, TN, USA.
R J AutryDepartment of Pharmaceutical Sciences, St Jude Children's Research Hospital, Memphis, TN, USA.
E Lopez-LopezDepartment of Pharmaceutical Sciences, St Jude Children's Research Hospital, Memphis, TN, USA.
B DioufDepartment of Pharmaceutical Sciences, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0002-3947-0611
S JehaDepartment of Oncology, St Jude Children's Research Hospital, Memphis, TN, USA.
C-H PuiDepartment of Oncology, St Jude Children's Research Hospital, Memphis, TN, USA.
E A RaetzDepartment of Pediatrics, University of Utah, Salt Lake City, UT, USA.
N J WinickDepartment of Pediatrics, University of Texas, Southwestern Medical Center, Dallas, TX, USA.
W L CarrollPerlmutter Cancer Center, Department of Pediatrics and Pathology, New York University Langone Medical Center, New York, NY, USA.
S P HungerDepartment of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
M L LohDepartment of Pediatrics, University of California School of Medicine, San Francisco, CA, USA.
M DevidasDepartment of Biostatistics, Colleges of Medicine, Public Health and Health Professions, University of Florida, Gainesville, FL, USA.
W E EvansDepartment of Pharmaceutical Sciences, St Jude Children's Research Hospital, Memphis, TN, USA.
J J YangDepartment of Pharmaceutical Sciences, St Jude Children's Research Hospital, Memphis, TN, USA.
M V RellingDepartment of Pharmaceutical Sciences, St Jude Children's Research Hospital, Memphis, TN, USA.
St. Jude Children's Research Hospital · USChildren's Hospital of Philadelphia · USCincinnati Children's Hospital Medical Center · USMaine Medical Center · USNYU Langone Health · USThe University of Texas Southwestern Medical Center · USUniversity of California, San Francisco · USUniversity of Florida · USUniversity of Pittsburgh · USUniversity of Utah · US

Funding

COG FOREIGN ACCRUALU10CA098543 · NCI · NATIONAL CHILDHOOD CANCER FOUNDATION · PI ADAMSON, PETER C. · 2003 to 2013
$335.5M
Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
COG SDMC - Statistics CoreU10CA180899 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TODD A ALONZO · 2014 to 2026
$132.8M
Children's Oncology Group Statistics &Data Center GrantU10CA098413 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI DEVIDAS, MEENAKSHI · 2003 to 2013
$67.5M
CPML - Project 3: Genome-wide Studies of Adverse EffectsP50GM115279 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI LOH, MIGNON LEE-CHEUN, RELLING, MARY V · 2015 to 2019
$15.1M
Support for Human Specimen Banking in NCI-Supported Cancer Clinical TrialsU24CA114766 · NCI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI RAMIREZ MILAN, NILSA DEL CARMEN · 2005 to 2014
$14.5M
CLINICAL PHARMACOLOGY TRAINING PROGRAMT32GM007569 · NIGMS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Bjorn C Knollmann · 1985 to 2026
$12.4M
PHARMACOGENOMICS OF CHILDHOOD LEUKEMIA (ALL)R37CA036401 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI EVANS, WILLIAM E · 1987 to 2014
$9.7M
PAARK4Kids-Pharmacogenomics of Anticancer Agents Research in ChildrenU01GM092666 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI RELLING, MARY V · 2010 to 2014
$8.9M
Vanderbilt Genome-Electronic Records ProjectU01HG004603 · NHGRI · VANDERBILT UNIVERSITY · PI RODEN, DAN M · 2007 to 2011
$7.3M
VESPA: Vanderbilt Electronic Systems for Pharmacogenomic AssessmentRC2GM092618 · NIGMS · VANDERBILT UNIVERSITY · PI DENNY, JOSHUA C., RODEN, DAN M · 2009 to 2010
$6.4M
From GWAS to PheWAS: Scanning the EMR Phenome for Gene-disease AssociationsR01LM010685 · NLM · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BASTARACHE, LISA · 2011 to 2022
$6.3M
NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA036401NCI NIH HHS R01 CA142665NCI NIH HHS R37 CA036401NCI NIH HHS U01 CA176063NCI NIH HHS U10 CA098413NCI NIH HHS U10 CA098543NCI NIH HHS U10 CA180899NCI NIH HHS U24 CA114766NHGRI NIH HHS U01 HG004603NIGMS NIH HHS P50 GM115279NIGMS NIH HHS RC2 GM092618NIGMS NIH HHS T32 GM007569NIGMS NIH HHS U01 GM092666NLM NIH HHS R01 LM010685
6 · The paper itself

Abstract

The causes of individual relapses in children with acute lymphoblastic leukemia (ALL) remain incompletely understood. We evaluated the contribution of germline genetic factors to relapse in 2225 children treated on Children's Oncology Group trial AALL0232. We identified 302 germline single-nucleotide polymorphisms (SNPs) associated with relapse after adjusting for treatment and ancestry and 715 additional SNPs associated with relapse in an ancestry-specific manner. We tested for replication of these relapse-associated SNPs in external data sets of antileukemic drug pharmacokinetics and pharmacodynamics and an independent clinical cohort. 224 SNPs were associated with rapid drug clearance or drug resistance, and 32 were replicated in the independent cohort. The adverse risk associated with black and Hispanic ancestries was attenuated by addition of the 4 SNPs most strongly associated with relapse in these populations (for blacks: model without SNPs hazard ratio (HR)=2.32, P=2.27 × 10

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAdultBiomarkers, TumorFemaleFollow-Up StudiesGenotypeHumansMaleNeoplasm Recurrence, LocalNeoplasm StagingPrecursor Cell Lymphoblastic Leukemia-LymphomaPrognosisRisk FactorsBiomarkers, Tumor

Identifiers

PMID28096535
PMCPMC5462853
OpenAlexW2573712238

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.