Evidence map›Paper›PMID 28096446›Full record

ArticleJournal of bacteriology2017

Rpn (YhgA-Like) Proteins of Escherichia coli K-12 and Their Contribution to RecA-Independent Horizontal Transfer.

Anthony W Kingston, Christine Ponkratz, Elisabeth A Raleigh

Open access · hybridAbstract read
In one paragraph

Article in Journal of bacteriology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.9field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Review
  3. A diverse family of bacterial deubiquitinases is defined by theProceedings of the National Academy of Sciences of the United States of America · 2025
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  4. Article
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  6. Antitoxins within toxins: A new theme in bacterial antivirus defense.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Toxic antiphage defense proteins inhibited by intragenic antitoxin proteins.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Article
  9. Competition-cooperation mechanism betweenFrontiers in microbiology · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Metagenomic discovery of CRISPR-associated transposons.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Anthony W KingstonNew England BioLabs, Ipswich, Massachusetts, USA.ORCID http://orcid.org/0000-0002-5560-2880
Christine PonkratzNew England BioLabs, Ipswich, Massachusetts, USA.ORCID http://orcid.org/0000-0001-6776-4556
Elisabeth A RaleighNew England BioLabs, Ipswich, Massachusetts, USA raleigh@neb.com.ORCID http://orcid.org/0000-0003-0745-9925
New England Biolabs (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria use a variety of DNA-mobilizing enzymes to facilitate environmental niche adaptation via horizontal gene transfer. This has led to real-world problems, like the spread of antibiotic resistance, yet many mobilization proteins remain undefined. In the study described here, we investigated the uncharacterized family of YhgA-like transposase_31 (Pfam PF04754) proteins. Our primary focus was the genetic and biochemical properties of the five

Indexed as

CalciumDeoxyribonuclease IEscherichia coli K12Escherichia coli ProteinsGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicGene Transfer, HorizontalMagnesiumProtein TransportRec A RecombinasesRecombination, GeneticCalciumDeoxyribonuclease IEscherichia coli ProteinsMagnesiumRec A RecombinasesconjugationDNA damageevolutionary biologygene functiongenomic instabilityhorizontal gene transferillegitimate recombinationprotein functionprotein motiftransposase

Identifiers

PMID28096446
PMCPMC5350276
OpenAlexW2574794593

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.