Evidence map›Paper›PMID 28096378›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Biosynthesis of the microtubule-destabilizing diterpene pseudolaric acid B from golden larch involves an unusual diterpene synthase.

Sibongile Mafu, Prema Sambandaswami Karunanithi, Teresa Ann Palazzo, Bronwyn Lee Harrod, Selina Marakana Rodriguez, Iris Natalie Mollhoff, Terrence Edward O'Brien, Shen Tong, Oliver Fiehn, Dean J Tantillo and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

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  13. Protonation-Initiated Cyclization by a Class II Terpene Cyclase Assisted by Tunneling.Chembiochem : a European journal of chemical biology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 3 countries.

Sibongile MafuDepartment of Plant Biology, University of California, Davis, CA 95616.
Prema Sambandaswami KarunanithiDepartment of Plant Biology, University of California, Davis, CA 95616.
Teresa Ann PalazzoDepartment of Chemistry, University of California, Davis, CA 95616.
Bronwyn Lee HarrodDepartment of Chemistry, University of California, Davis, CA 95616.
Selina Marakana RodriguezDepartment of Plant Biology, University of California, Davis, CA 95616.
Iris Natalie MollhoffDepartment of Plant Biology, University of California, Davis, CA 95616.
Terrence Edward O'BrienDepartment of Chemistry, University of California, Davis, CA 95616.
Shen TongWest Coast Metabolomics Center, University of California, Davis, CA 95616.
Oliver FiehnWest Coast Metabolomics Center, University of California, Davis, CA 95616.
Dean J TantilloDepartment of Chemistry, University of California, Davis, CA 95616.
Jörg BohlmannMichael Smith Laboratories, University of British Columbia, Vancouver, BC V6T 1Z4, Canada.
Philipp ZerbeDepartment of Plant Biology, University of California, Davis, CA 95616; pzerbe@ucdavis.edu.
University of California, Davis · USUniversity of British Columbia · CA

Funding

West Coast Central Comprehensive Metabolomics Resource Core (WC3MRC)U24DK097154 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI FIEHN, OLIVER · 2012 to 2017
$9.9M
UC Davis MCB T32 Administrative Supplement to Recognize Excellence in Diversity, Equity, Inclusion, and Accessibility (DEIA) MentorshipT32GM007377 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CHEDIN, FREDERIC LOUIS · 1985 to 2023
$9.9M
Metabolomics: an accurate mass GC-DART AccuTOF mass spectrometer for routine idenS10RR031630 · NCRR · UNIVERSITY OF CALIFORNIA AT DAVIS · PI FIEHN, OLIVER · 2011 to 2011
$260k
NCRR NIH HHS S10 RR031630NIDDK NIH HHS U24 DK097154NIGMS NIH HHS T32 GM007377
6 · The paper itself

Abstract

The diversity of small molecules formed via plant diterpene metabolism offers a rich source of known and potentially new biopharmaceuticals. Among these, the microtubule-destabilizing activity of pseudolaric acid B (PAB) holds promise for new anticancer agents. PAB is found, perhaps uniquely, in the coniferous tree golden larch (Pseudolarix amabilis, Pxa). Here we describe the discovery and mechanistic analysis of golden larch terpene synthase 8 (PxaTPS8), an unusual diterpene synthase (diTPS) that catalyzes the first committed step in PAB biosynthesis. Mining of the golden larch root transcriptome revealed a large TPS family, including the monofunctional class I diTPS PxaTPS8, which converts geranylgeranyl diphosphate into a previously unknown 5,7-fused bicyclic diterpene, coined "pseudolaratriene." Combined NMR and quantum chemical analysis verified the structure of pseudolaratriene, and co-occurrence with PxaTPS8 and PAB in P amabilis tissues supports the intermediacy of pseudolaratriene in PAB metabolism. Although PxaTPS8 adopts the typical three-domain structure of diTPSs, sequence phylogeny places the enzyme with two-domain TPSs of mono- and sesqui-terpene biosynthesis. Site-directed mutagenesis of PxaTPS8 revealed several catalytic residues that, together with quantum chemical calculations, suggested a substantial divergence of PxaTPS8 from other TPSs leading to a distinct carbocation-driven reaction mechanism en route to the 5,7-trans-fused bicyclic pseudolaratriene scaffold. PxaTPS8 expression in microbial and plant hosts provided proof of concept for metabolic engineering of pseudolaratriene.

Indexed as

Agrobacterium tumefaciensAlkyl and Aryl TransferasesAmino Acid SequenceCatalytic DomainCloning, MolecularDiterpenesDNA, ComplementaryLarixMutagenesis, Site-DirectedPlant ProteinsPlant RootsPolyisoprenyl PhosphatesRecombinant Fusion ProteinsRNA InterferenceSaccharomyces cerevisiaeSequence AlignmentAlkyl and Aryl TransferasesDiterpenesDNA, Complementarygeranylgeranyl pyrophosphatePlant ProteinsPolyisoprenyl Phosphatespseudolaric acid BRecombinant Fusion Proteinsterpene synthasechemotherapeutic drugditerpene biosynthesisplant natural productspseudolaric acidPseudolarix amabilis

Identifiers

PMID28096378
PMCPMC5293046
OpenAlexW2573284551

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.