Evidence map›Paper›PMID 28096352›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Recognition of protein-linked glycans as a determinant of peptidase activity.

Ilit Noach, Elizabeth Ficko-Blean, Benjamin Pluvinage, Christopher Stuart, Meredith L Jenkins, Denis Brochu, Nakita Buenbrazo, Warren Wakarchuk, John E Burke, Michel Gilbert and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 95 citations in OpenAlex.

  1. Discovery of a secretedGut microbes · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Degradation of mucinbioRxiv : the preprint server for biology · 2026
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. mBio · 2024
    Article
  16. Article
  17. Article
  18. Cultivation of Microorganisms in Media Supplemented with Mucin Glycoproteins.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  19. Toxinotyping ofIranian journal of veterinary research · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Ilit NoachDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Elizabeth Ficko-BleanDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Benjamin PluvinageDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Christopher StuartDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Meredith L JenkinsDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Denis BrochuHuman Health Therapeutics, National Research Council Canada, Ottawa, ON K1A 0R6, Canada.
Nakita BuenbrazoDepartment of Chemistry and Biology, Ryerson University, Toronto, ON M5B 2K3, Canada.
Warren WakarchukDepartment of Chemistry and Biology, Ryerson University, Toronto, ON M5B 2K3, Canada.
John E BurkeDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada.
Michel GilbertHuman Health Therapeutics, National Research Council Canada, Ottawa, ON K1A 0R6, Canada.
Alisdair B BorastonDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8W 3P6, Canada; boraston@uvic.ca.
University of Victoria · CANational Research Council Canada · CAToronto Metropolitan University · CA

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
Protein-Glycan Interaction Resource of the CFGR24GM098791 · NIGMS · EMORY UNIVERSITY · PI CUMMINGS, RICHARD D, PAULSON, JAMES C · 2011 to 2013
$2.6M
CIHR MOP-130305NCRR NIH HHS P41 RR001209NIGMS NIH HHS R24 GM098791
6 · The paper itself

Abstract

The vast majority of proteins are posttranslationally altered, with the addition of covalently linked sugars (glycosylation) being one of the most abundant modifications. However, despite the hydrolysis of protein peptide bonds by peptidases being a process essential to all life on Earth, the fundamental details of how peptidases accommodate posttranslational modifications, including glycosylation, has not been addressed. Through biochemical analyses and X-ray crystallographic structures we show that to hydrolyze their substrates, three structurally related metallopeptidases require the specific recognition of O-linked glycan modifications via carbohydrate-specific subsites immediately adjacent to their peptidase catalytic machinery. The three peptidases showed selectivity for different glycans, revealing protein-specific adaptations to particular glycan modifications, yet always cleaved the peptide bond immediately preceding the glycosylated residue. This insight builds upon the paradigm of how peptidases recognize substrates and provides a molecular understanding of glycoprotein degradation.

Indexed as

Escherichia coliFetuinsGlycopeptidesGlycosylationMucinsPeptide HydrolasesPolysaccharidesProtein ConformationProtein Processing, Post-TranslationalFetuinsGlycopeptidesMucinsPeptide HydrolasesPolysaccharidesglycoproteinmetallopeptidaseO-glycopeptidaseO-glycosylation

Identifiers

PMID28096352
PMCPMC5293097
OpenAlexW2579867384

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.