Evidence map›Paper›PMID 28096310›Full record

ArticleGlycobiology2017

Characterization of the dTDP-Fuc3N and dTDP-Qui3N biosynthetic pathways in Campylobacter jejuni 81116.

Zack Z Li, Alexander S Riegert, Marie-France Goneau, Anna M Cunningham, Evgeny Vinogradov, Jianjun Li, Ian C Schoenhofen, James B Thoden, Hazel M Holden, Michel Gilbert

Open access · bronzeAbstract read
In one paragraph

Article in Glycobiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 60% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Structural investigation on WlaRG from Campylobacter jejuni: A sugar aminotransferase.Protein science : a publication of the Protein Society · 2017
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Zack Z LiNational Research Council Canada, Human Health Therapeutics, 100 Sussex Drive, Ottawa, ON, Canada.
Alexander S RiegertDepartment of Biochemistry, University of Wisconsin, 440 Henry Mall, Madison, WI, USA.
Marie-France GoneauNational Research Council Canada, Human Health Therapeutics, 100 Sussex Drive, Ottawa, ON, Canada.
Anna M CunninghamNational Research Council Canada, Human Health Therapeutics, 100 Sussex Drive, Ottawa, ON, Canada.
Evgeny VinogradovNational Research Council Canada, Human Health Therapeutics, 100 Sussex Drive, Ottawa, ON, Canada.
Jianjun LiNational Research Council Canada, Human Health Therapeutics, 100 Sussex Drive, Ottawa, ON, Canada.
Ian C SchoenhofenNational Research Council Canada, Human Health Therapeutics, 100 Sussex Drive, Ottawa, ON, Canada.
James B ThodenDepartment of Biochemistry, University of Wisconsin, 440 Henry Mall, Madison, WI, USA.
Hazel M HoldenDepartment of Biochemistry, University of Wisconsin, 440 Henry Mall, Madison, WI, USA.
Michel GilbertNational Research Council Canada, Human Health Therapeutics, 100 Sussex Drive, Ottawa, ON, Canada.
National Research Council Canada · CAUniversity of Wisconsin–Madison · US

Funding

X-ray Studies of Sugar-Modifying EnzymesR01GM115921 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HOLDEN, HAZEL M. · 2016 to 2019
$1.4M
NIGMS NIH HHS R01 GM115921
6 · The paper itself

Abstract

The Gram-negative bacterium Campylobacter jejuni 81116 (Penner serotype HS:6) has a class E lipooligosaccharide (LOS) biosynthesis locus containing 19 genes, which encode for 11 putative glycosyltransferases, 1 lipid A acyltransferase and 7 enzymes thought to be involved in the biosynthesis of dideoxyhexosamine (ddHexN) moieties. Although the LOS outer core structure of C. jejuni 81116 is still unknown, recent mass spectrometry analyses suggest that it contains acetylated forms of two ddHexN residues. For this investigation, five of the genes encoding enzymes reportedly involved in the biosyntheses of these sugar residues were examined, rmlA, rmlB, wlaRA, wlaRB and wlaRG. Specifically, these genes were cloned and expressed in Escherichia coli, and the corresponding enzymes were purified and tested for biochemical activity. Here we present data demonstrating that RmlA functions as a glucose-1-phosphate thymidylyltransferase and that RmlB is a thymidine diphosphate (dTDP)-glucose 4,6-dehydratase. We also show, through nuclear magnetic resonance spectroscopy and mass spectrometry analyses, that WlaRG, when utilized in coupled assays with either WlaRA or WlaRB and dTDP-4-keto-6-deoxyglucose, results in the production of either dTDP-3-amino-3,6-dideoxy-d-galactose (dTDP-Fuc3N) or dTDP-3-amino-3,6-dideoxy-d-glucose (dTDP-Qui3N), respectively. In addition, the X-ray crystallographic structures of the 3,4-ketoisomerases, WlaRA and WlaRB, were determined to 2.14 and 2.0 Å resolutions, respectively. Taken together, the data reported herein demonstrate that C. jejuni 81116 utilizes five enzymes to synthesize dTDP-Fuc3N or dTDP-Qui3N and that WlaRG, an aminotransferase, can function on sugars with differing stereochemistry about their C-4' carbons. Importantly, the data reveal that C. jejuni 81116 has the ability to synthesize two isomeric ddHexN forms.

Indexed as

AcyltransferasesBiosynthetic PathwaysCampylobacter jejuniCrystallography, X-RayEscherichia coliGalactoseGlucoseGlycosyltransferasesLipopolysaccharidesNucleotidyltransferasesThymine NucleotidesAcyltransferasesGalactoseGlucoseglucose-1-phosphate thymidylyltransferaseGlycosyltransferaseslipid-linked oligosaccharidesLipopolysaccharidesNucleotidyltransferasesThymine NucleotidesCampylobacterfucosamineketoisomeraselipooligosaccharidequinovosamine

Identifiers

PMID28096310
PMCPMC5441919
OpenAlexW2575613527

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.