Evidence map›Paper›PMID 28095675›Full record

ArticleACS chemical neuroscience2017

Elucidating Important Sites and the Mechanism for Amyloid Fibril Formation by Coarse-Grained Molecular Dynamics.

Ana Rojas, Nika Maisuradze, Khatuna Kachlishvili, Harold A Scheraga, Gia G Maisuradze

Abstract read
In one paragraph

Article in ACS chemical neuroscience, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Early Stages of RNA-Mediated Conversion of Human Prions.The journal of physical chemistry. B · 2022
    Article
  5. Article
  6. Article
  7. Probing Protein Aggregation Using the Coarse-Grained UNRES Force Field.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  8. Computational Models for the Study of Protein Aggregation.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  9. Wild-TypeFrontiers in molecular biosciences · 2022
    Article
  10. Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Out-of-Register AβJournal of chemical theory and computation · 2018
    Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ana RojasBaker Laboratory of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853-1301, United States.
Nika MaisuradzeBaker Laboratory of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853-1301, United States.
Khatuna KachlishviliBaker Laboratory of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853-1301, United States.
Harold A ScheragaBaker Laboratory of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853-1301, United States.
Gia G MaisuradzeBaker Laboratory of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853-1301, United States.

Funding

INTERNAL BONDIN IN PROTEINSR01GM014312 · NIGMS · CORNELL UNIVERSITY ITHACA · PI MAISURADZE, GIA, RACKOVSKY, SHALOM R · 1985 to 2021
$9.4M
NIGMS NIH HHS R01 GM014312
6 · The paper itself

Abstract

Fibrils formed by the β-amyloid (Aβ) peptide play a central role in the development of Alzheimer's disease. In this study, the principles governing their growth and stability are investigated by analyzing canonical and replica-exchange molecular dynamics trajectories of Aβ

Indexed as

Models, MolecularMolecular Dynamics SimulationAmyloid beta-PeptidesBinding SitesBiophysical PhenomenaComputer SimulationHumansHydrogen BondingHydrophobic and Hydrophilic InteractionsPeptide FragmentsProtein BindingProtein MultimerizationThermodynamicsAmyloid beta-PeptidesPeptide FragmentsamyloidsAβ peptidereplica-exchange molecular dynamics“stop-and-go” mechanismthermal unfoldingUNRES force field

Identifiers

PMID28095675
PMCPMC5245180

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.