Evidence map›Paper›PMID 28095202›Full record

ArticleNeural computation2017

Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings.

Anup Das, Aaron L Sampson, Claudia Lainscsek, Lyle Muller, Wutu Lin, John C Doyle, Sydney S Cash, Eric Halgren, Terrence J Sejnowski

Open access · greenAbstract read
In one paragraph

Article in Neural computation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  3. Dynamic brain states in spatial neglect after stroke.Frontiers in systems neuroscience · 2023
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  10. Heterogeneity of Preictal Dynamics in Human Epileptic Seizures.IEEE access : practical innovations, open solutions · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Anup DasDepartment of Electrical and Computer Engineering, University of California, San Diego, La Jolla, CA 92093, U.S.A., and Computational Neurobiology Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, U.S.A. a1das@eng.ucsd.edu.
Aaron L SampsonComputational Neurobiology Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, U.S.A. asampson@salk.edu.
Claudia LainscsekComputational Neurobiology Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, U.S.A. claudia@salk.edu.
Lyle MullerComputational Neurobiology Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, U.S.A. lmuller@salk.edu.
Wutu LinComputational Neurobiology Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, U.S.A. wulin@salk.edu.
John C DoyleDivision of Engineering and Applied Science, California Institute of Technology, Pasadena, CA 91125, U.S.A. doyle@caltech.edu.
Sydney S CashCortical Physiology Laboratory, Massachusetts General Hospital, Boston, MA 02114, U.S.A. scash@partners.org.
Eric HalgrenDepartment of Radiology, University of California, San Diego, La Jolla, CA 92093, U.S.A. ehalgren@ucsd.edu.
Terrence J SejnowskiDivision of Biological Sciences and Institute of Neural Computation, University of California, San Diego, La Jolla, CA 92093, U.S.A., and Howard Hughes Medical Institute, Salk Institute for Biological Studies, La Jolla, CA 92037, U.S.A. terry@salk.edu.
California Institute of Technology · US

Funding

TRAINING PROGRAM IN COGNITIVE NEUROSCIENCET32MH020002 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SEJNOWSKI, TERRENCE J · 1999 to 2020
$6.1M
CRCNS: Integrated Empirical and Multiscale Modeling of Human Sleep SpindlesR01EB009282 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SEJNOWSKI, TERRENCE J · 2008 to 2016
$3.7M
Howard Hughes Medical InstituteNIBIB NIH HHS R01 EB009282NIMH NIH HHS T32 MH020002
6 · The paper itself

Abstract

The correlation method from brain imaging has been used to estimate functional connectivity in the human brain. However, brain regions might show very high correlation even when the two regions are not directly connected due to the strong interaction of the two regions with common input from a third region. One previously proposed solution to this problem is to use a sparse regularized inverse covariance matrix or precision matrix (SRPM) assuming that the connectivity structure is sparse. This method yields partial correlations to measure strong direct interactions between pairs of regions while simultaneously removing the influence of the rest of the regions, thus identifying regions that are conditionally independent. To test our methods, we first demonstrated conditions under which the SRPM method could indeed find the true physical connection between a pair of nodes for a spring-mass example and an RC circuit example. The recovery of the connectivity structure using the SRPM method can be explained by energy models using the Boltzmann distribution. We then demonstrated the application of the SRPM method for estimating brain connectivity during stage 2 sleep spindles from human electrocorticography (ECoG) recordings using an [Formula: see text] electrode array. The ECoG recordings that we analyzed were from a 32-year-old male patient with long-standing pharmaco-resistant left temporal lobe complex partial epilepsy. Sleep spindles were automatically detected using delay differential analysis and then analyzed with SRPM and the Louvain method for community detection. We found spatially localized brain networks within and between neighboring cortical areas during spindles, in contrast to the case when sleep spindles were not present.

Indexed as

Brain MappingModels, NeurologicalBrainComputer SimulationElectrocorticographyHumansNeural PathwaysNonlinear DynamicsSleepTime Factors

Identifiers

PMID28095202
PMCPMC5424817
OpenAlexW2575497268

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.