ArticleScientific data2017
Whole genome sequencing data and de novo draft assemblies for 66 teleost species.
Article in Scientific data, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.
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45 citing papers in PubMed.
- Complete Mitochondrial Genome of Turrum coeruleopinnatum Provides Phylogenetic Context and Candidate Selection Signals Within Carangidae.Biochemical genetics · 2026Article
- The Vertebrate Genomes Project Phase I: A global reference genome resource.bioRxiv : the preprint server for biology · 2026Article
- Intron turnover of slc26a1 and slc26a2 and convergence of intron insertion sites.Scientific reports · 2025Article
- Chromosome-level genome assembly and annotation of the skinnycheek lanternfish Benthosema ptertum.Scientific data · 2024Article
- Multi-genome comparisons reveal gain-and-loss evolution of anti-Mullerian hormone receptor type 2 as a candidate master sex-determining gene in Percidae.BMC biology · 2024Article
- A chromosome-level genome of the striated frogfish (Antennarius striatus).Scientific data · 2024Article
- Mitochondrial genome structure and composition in 70 fishes: a key resource for fisheries management in the South Atlantic.BMC genomics · 2024Article
- Subtle transcriptomic response of Eurasian perch (International journal for parasitology. Parasites and wildlife · 2023Article
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- Potential Contribution of Ancient Introgression to the Evolution of a Derived Reproductive Strategy in Ricefishes.Genome biology and evolution · 2023Article
- No evidence for sex chromosomes in natural populations of the cichlid fish Astatotilapia burtoni.G3 (Bethesda, Md.) · 2023Article
- First paleoproteome study of fossil fish otoliths and the pristine preservation of the biomineral crystal host.Scientific reports · 2023Article
- Development of dim-light vision in the nocturnal reef fish family Holocentridae. I: Retinal gene expression.The Journal of experimental biology · 2022Article
- The First Genome Survey and De Novo Assembly of the Short Mackerel (Animals : an open access journal from MDPI · 2022Article
- The phylogeny of Salix revealed by whole genome re-sequencing suggests different sex-determination systems in major groups of the genus.Annals of botany · 2022Article
- Genomic variations and epigenomic landscape of the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel.Genome biology · 2022Article
- Complete mitochondrial genomes of two rockfish:Mitochondrial DNA. Part B, Resources · 2022Article
- Article
- De novo genome assembly of the marine teleost, bluefin trevally (Caranx melampygus).G3 (Bethesda, Md.) · 2021Article
- Genomic Basis of Striking Fin Shapes and Colors in the Fighting Fish.Molecular biology and evolution · 2021Article
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Teleost fishes comprise more than half of all vertebrate species, yet genomic data are only available for 0.2% of their diversity. Here, we present whole genome sequencing data for 66 new species of teleosts, vastly expanding the availability of genomic data for this important vertebrate group. We report on de novo assemblies based on low-coverage (9-39×) sequencing and present detailed methodology for all analyses. To facilitate further utilization of this data set, we present statistical analyses of the gene space completeness and verify the expected phylogenetic position of the sequenced genomes in a large mitogenomic context. We further present a nuclear marker set used for phylogenetic inference and evaluate each gene tree in relation to the species tree to test for homogeneity in the phylogenetic signal. Collectively, these analyses illustrate the robustness of this highly diverse data set and enable extensive reuse of the selected phylogenetic markers and the genomic data in general. This data set covers all major teleost lineages and provides unprecedented opportunities for comparative studies of teleosts.
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