Evidence map›Paper›PMID 28094349›Full record

ArticleScientific reports2017

Proteomic and Carbonylation Profile Analysis at the Critical Node of Seed Ageing in Oryza sativa.

Guangkun Yin, Xia Xin, Shenzao Fu, Mengni An, Shuhua Wu, Xiaoling Chen, Jinmei Zhang, Juanjuan He, James Whelan, Xinxiong Lu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
11.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Seed longevity and genome damage.Bioscience reports · 2024
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Dissecting the Seed Maturation and Germination Processes in the Non-OrthodoxInternational journal of molecular sciences · 2020
    Article
  15. Article
  16. Article
  17. Proteome Map of Pea (International journal of molecular sciences · 2018
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Guangkun YinNational Genebank, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Xia XinNational Genebank, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Shenzao FuNational Genebank, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Mengni AnNational Genebank, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Shuhua WuNational Genebank, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Xiaoling ChenNational Genebank, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Jinmei ZhangNational Genebank, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Juanjuan HeNational Genebank, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
James WhelanAustralian Research Council Centre of Excellence in Plant Energy Biology, School of Life Science, La Trobe University, Bundoora, Victoria 3083, Australia.
Xinxiong LuNational Genebank, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Institute of Crop Sciences · CNChinese Academy of Agricultural Sciences · CNLa Trobe University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The critical node (CN), which is the transition from the plateau phase to the rapid decreasing phase of seed ageing, is extremely important for seed conservation. Although numerous studies have investigated the oxidative stress during seed ageing, information on the changes in protein abundance at the CN is limited. In this study, we aimed to investigate the abundance and carbonylation patterns of proteins at the CN of seed ageing in rice. The results showed that the germination rate of seeds decreased by less than 20% at the CN; however, the abundance of 112 proteins and the carbonylation levels of 68 proteins markedly changed, indicating oxidative damage. The abundance and activity of mitochondrial, glycolytic, and pentose phosphate pathway proteins were reduced; consequently, this negatively affected energy production and germination. Proteins related to defense, including antioxidant system and heat shock proteins, also reduced in abundance. Overall, energy metabolism was reduced at the CN, leading to a decrease in the antioxidant capacity, whereas seed storage proteins were up-regulated and carbonylated, indicating that the seed had a lower ability to utilize seed storage proteins for germination. Thus, the significant decrease in metabolic activities at the CN might accelerate the loss of seed viability.

Indexed as

ProteomeProteomicsOryzaOxidative StressProtein CarbonylationReactive Oxygen SpeciesSeedsProteomeReactive Oxygen Species

Identifiers

PMID28094349
PMCPMC5240128
OpenAlexW2573242603

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.