Evidence map›Paper›PMID 28094339›Full record

ArticleScientific reports2017

Massive Effect on LncRNAs in Human Monocytes During Fungal and Bacterial Infections and in Response to Vitamins A and D.

Konstantin Riege, Martin Hölzer, Tilman E Klassert, Emanuel Barth, Julia Bräuer, Maximilian Collatz, Franziska Hufsky, Nelly Mostajo, Magdalena Stock, Bertram Vogel and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 41 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Konstantin RiegeFriedrich Schiller University, Bioinformatics/High Throughput Analysis, Jena, 07743, Germany.
Martin HölzerFriedrich Schiller University, Bioinformatics/High Throughput Analysis, Jena, 07743, Germany.
Tilman E KlassertJena University Hospital, Septomics Research Center, Jena, 07745, Germany.
Emanuel BarthFriedrich Schiller University, Bioinformatics/High Throughput Analysis, Jena, 07743, Germany.
Julia BräuerJena University Hospital, Septomics Research Center, Jena, 07745, Germany.
Maximilian CollatzFriedrich Schiller University, Bioinformatics/High Throughput Analysis, Jena, 07743, Germany.
Franziska HufskyFriedrich Schiller University, Bioinformatics/High Throughput Analysis, Jena, 07743, Germany.
Nelly MostajoFriedrich Schiller University, Bioinformatics/High Throughput Analysis, Jena, 07743, Germany.
Magdalena StockJena University Hospital, Septomics Research Center, Jena, 07745, Germany.
Bertram VogelFriedrich Schiller University, Bioinformatics/High Throughput Analysis, Jena, 07743, Germany.
Hortense SlevogtJena University Hospital, Septomics Research Center, Jena, 07745, Germany.
Manja MarzFriedrich Schiller University, Bioinformatics/High Throughput Analysis, Jena, 07743, Germany.
Friedrich Schiller University Jena · DEJena University Hospital · DELeibniz Association · DEPhilipps University of Marburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycoses induced by C.albicans or A.fumigatus can cause important host damage either by deficient or exaggerated immune response. Regulation of chemokine and cytokine signaling plays a crucial role for an adequate inflammation, which can be modulated by vitamins A and D. Non-coding RNAs (ncRNAs) as transcription factors or cis-acting antisense RNAs are known to be involved in gene regulation. However, the processes during fungal infections and treatment with vitamins in terms of therapeutic impact are unknown. We show that in monocytes both vitamins regulate ncRNAs involved in amino acid metabolism and immune system processes using comprehensive RNA-Seq analyses. Compared to protein-coding genes, fungi and bacteria induced an expression change in relatively few ncRNAs, but with massive fold changes of up to 4000. We defined the landscape of long-ncRNAs (lncRNAs) in response to pathogens and observed variation in the isoforms composition for several lncRNA following infection and vitamin treatment. Most of the involved antisense RNAs are regulated and positively correlated with their sense protein-coding genes. We investigated lncRNAs with stimulus specific immunomodulatory activity as potential marker genes: LINC00595, SBF2-AS1 (A.fumigatus) and RP11-588G21.2, RP11-394l13.1 (C.albicans) might be detectable in the early phase of infection and serve as therapeutic targets in the future.

Indexed as

Bacterial InfectionsGene Expression RegulationHumansMonocytesMycosesRNA, AntisenseRNA, Long NoncodingRNA, MessengerRNA, UntranslatedVitamin AVitamin DRNA, AntisenseRNA, Long NoncodingRNA, MessengerRNA, UntranslatedVitamin AVitamin D

Identifiers

PMID28094339
PMCPMC5240112
OpenAlexW2577588860

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.