Evidence map›Paper›PMID 28093925›Full record

ArticleEpigenomics2017

Hypermethylation of antisense long noncoding RNAs in acute lymphoblastic leukemia.

Gerald Arthur, Md Almamun, Kristen Taylor

Open access · greenAbstract read
In one paragraph

Article in Epigenomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Gerald ArthurDepartment of Pathology & Anatomical Sciences, University of Missouri-Columbia, Columbia, MO 65212, USA.
Md AlmamunHematology/Oncology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Kristen TaylorDepartment of Pathology & Anatomical Sciences, University of Missouri-Columbia, Columbia, MO 65212, USA.
University of Missouri · USHarvard University · US

Funding

Towards defining the functional methylome in acute lymphoblastic leukemiaR00CA132784 · NCI · UNIVERSITY OF MISSOURI-COLUMBIA · PI TAYLOR, KRISTEN H · 2011 to 2013
$694k
NCI NIH HHS R00 CA132784
6 · The paper itself

Abstract

aimLong noncoding RNAs serve critical regulatory functions highly specific for a tissue and its developmental stage. Antisense long ncRNA (AS-lncRNA) methylation changes in acute lymphoblastic leukemia (ALL) versus normal pre-B-cell lymphoblasts were evaluated to identify potential differential methylation in this group of genes. MATERIALS &

methodsThe methylome of ALL and normal lymphoblasts was examined by the methylated CpG island recovery assay followed by NGS.

conclusionThe potential effect of trans regulation by AS-lncRNA through DNA/RNA binding is significant as sequence alignment analysis of the 25 most differentially methylated AS-lncRNAs revealed 368 genes containing highly similar sequences with a median nucleotide identity of 90.8% and binding span of 122 base pairs. Regulation of biological processes and anatomical structure development were over represented. ALL classification schemes based on AS-lncRNA methylation can provide new insights into its pathogenesis and treatment.

Indexed as

DNA MethylationB-LymphocytesCase-Control StudiesCpG IslandsEpigenesis, GeneticGene Expression Regulation, NeoplasticHumansPrecursor Cell Lymphoblastic Leukemia-LymphomaRNA, AntisenseRNA, Long NoncodingRNA, AntisenseRNA, Long NoncodingDNA methylationepigenetic regulationslncRNA

Identifiers

PMID28093925
PMCPMC6040088
OpenAlexW2577601702

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.