Evidence map›Paper›PMID 28093616›Full record

ArticleJournal of molecular medicine (Berlin, Germany)2017

Rare germline alterations in cancer-related genes associated with the risk of multiple primary tumor development.

Rolando A R Villacis, Tatiane R Basso, Luisa M Canto, Maísa Pinheiro, Karina M Santiago, Juliana Giacomazzi, Cláudia A A de Paula, Dirce M Carraro, Patrícia Ashton-Prolla, Maria I Achatz and 1 more

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of molecular medicine (Berlin, Germany), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Molecular karyotyping and gene expression analysis in childhood cancer patients.Journal of molecular medicine (Berlin, Germany) · 2020
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Rolando A R VillacisInternational Center for Research (CIPE), A.C. Camargo Cancer Center, São Paulo, SP, Brazil.
Tatiane R BassoInternational Center for Research (CIPE), A.C. Camargo Cancer Center, São Paulo, SP, Brazil.
Luisa M CantoInternational Center for Research (CIPE), A.C. Camargo Cancer Center, São Paulo, SP, Brazil.
Maísa PinheiroInternational Center for Research (CIPE), A.C. Camargo Cancer Center, São Paulo, SP, Brazil.
Karina M SantiagoDepartment of Oncogenetics, A.C. Camargo Cancer Center, São Paulo, SP, Brazil.
Juliana GiacomazziDepartment of Genetics, Federal University of Rio Grande do Sul (UFRGS) and Medical Genetics Service, Hospital de Clínicas de Porto Alegre, Porto Alegre, RS, Brazil.
Cláudia A A de PaulaInternational Center for Research (CIPE), A.C. Camargo Cancer Center, São Paulo, SP, Brazil.
Dirce M CarraroInternational Center for Research (CIPE), A.C. Camargo Cancer Center, São Paulo, SP, Brazil.
Patrícia Ashton-ProllaDepartment of Genetics, Federal University of Rio Grande do Sul (UFRGS) and Medical Genetics Service, Hospital de Clínicas de Porto Alegre, Porto Alegre, RS, Brazil.
Maria I AchatzDepartment of Oncogenetics, A.C. Camargo Cancer Center, São Paulo, SP, Brazil.
Silvia R RogattoInternational Center for Research (CIPE), A.C. Camargo Cancer Center, São Paulo, SP, Brazil. silvia.regina.rogatto@rsyd.dk.
AC Camargo Hospital · BRHospital de Clínicas de Porto Alegre · BRDepartment of Health and Human Services · USVejle Sygehus · DK

Funding

Clinical Genetic Studies of Familial and Hereditary Cancer SyndromesZIACP010144 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI SAVAGE, SHARON A. · 2009 to 2025
$111.8M
6 · The paper itself

Abstract

Multiple primary tumors (MPT) have been described in carriers of inherited cancer predisposition genes. However, the genetic etiology of a large proportion of MPT cases remains unclear. We reviewed 267 patients with hereditary cancer predisposition syndromes (HCPS) that underwent genetic counseling and selected 22 patients with MPT to perform genomic analysis (CytoScan HD Array, Affymetrix) aiming to identify new alterations related to a high risk of developing MPT. Twenty patients had a positive family history of cancer and 11 met phenotypic criteria for HCPS. Genetic testing for each of the genes associated with these syndromes revealed negative results for pathogenic mutations. Seventeen rare germline copy number variations (CNVs) covering 40 genes were identified in 11 patients, including an EPCAM/MSH2 deletion in one Lynch syndrome patient. An enrichment analysis revealed a significant number of genes (where the CNVs are mapped) associated with carcinogenesis and/or related to functions implicated with tumor development, such as proliferation and cell survival. An interaction network analysis highlighted the importance of TP53 pathway in cancer emergence. A high number of germline copy-neutral loss of heterozygosity (cnLOH) was identified in nine cases, particularly in two patients. Eighteen genes were covered by both rare CNVs and cnLOH, including 14 related to tumorigenesis and seven genes (ABCC1, KDM4C, KIAA0430, MYH11, NDE1, PIWIL2, and ULK2) specifically associated with cellular growth and proliferation. Overall, we identified 14 cases with rare CNVs and/or cnLOH that may contribute to the risk of MPT development. KEY MESSAGE: CNVs may explain the risk of hereditary cancer syndromes in MPT patients. CNVs affecting genes related to cancer are candidates to be involved in MPT risk. EPCAM/MSH2 deletions should be investigated in patients suspected to have LS. Gene enrichment related to the TP53 network is associated with MPT development. cnLOH and CNVs contribute to the risk of MPT development.

Indexed as

AdultColorectal Neoplasms, Hereditary NonpolyposisDNA Copy Number VariationsEpithelial Cell Adhesion MoleculeFemaleGenetic Predisposition to DiseaseGerm-Line MutationHumansLoss of HeterozygosityMaleMutS Homolog 2 ProteinNeoplasmsEPCAM protein, humanEpithelial Cell Adhesion MoleculeMSH2 protein, humanMutS Homolog 2 ProteincnLOHCNVHereditary cancer predisposition syndromesMicroarrayMultiple primary tumors

Identifiers

PMID28093616
OpenAlexW2573611369

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.