Evidence map›Paper›PMID 28092684›Full record

ArticleNature genetics2017

Biallelic mutations in the 3' exonuclease TOE1 cause pontocerebellar hypoplasia and uncover a role in snRNA processing.

Rea M Lardelli, Ashleigh E Schaffer, Veerle R C Eggens, Maha S Zaki, Stephanie Grainger, Shashank Sathe, Eric L Van Nostrand, Zinayida Schlachetzki, Basak Rosti, Naiara Akizu and 49 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
14.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 100 citations in OpenAlex.

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  10. Review
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  14. Article
  15. Article
  16. Article
  17. Sm complex assembly and 5' cap trimethylation promote selective processing of snRNAs by the 3' exonuclease TOE1.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  18. Article
  19. Functional Insight into hTRIR.Current molecular medicine · 2024
    Article
  20. Coilin and Cajal bodies.Nucleus (Austin, Tex.) · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

59 authors at 20 institutions in 12 countries.

Rea M LardelliUniversity of California San Diego, La Jolla, California, USA.
Ashleigh E SchafferUniversity of California San Diego, La Jolla, California, USA.
Veerle R C EggensDepartment of Clinical Genetics, Academic Medical Center, Amsterdam, the Netherlands.
Maha S ZakiClinical Genetics Department, Human Genetics and Genome Research Division, National Research Centre, Cairo, Egypt.
Stephanie GraingerDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, California, USA.
Shashank SatheDepartment of Cellular and Molecular Medicine, Stem Cell Program and Institute for Genomic Medicine, University of California San Diego, La Jolla, California, USA.
Eric L Van NostrandDepartment of Cellular and Molecular Medicine, Stem Cell Program and Institute for Genomic Medicine, University of California San Diego, La Jolla, California, USA.
Zinayida SchlachetzkiLaboratory of Pediatric Brain Disease and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Basak RostiLaboratory of Pediatric Brain Disease and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Naiara AkizuLaboratory of Pediatric Brain Disease and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Eric ScottLaboratory of Pediatric Brain Disease and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Jennifer L SilhavyLaboratory of Pediatric Brain Disease and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Laura Dean HeckmanLaboratory of Pediatric Brain Disease and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Rasim Ozgur RostiLaboratory of Pediatric Brain Disease and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Esra DikogluLaboratory of Pediatric Brain Disease and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Anne GregorLaboratory of Pediatric Brain Disease and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Alicia Guemez-GamboaLaboratory of Pediatric Brain Disease and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Damir MusaevLaboratory of Pediatric Brain Disease and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Rohit MandeLaboratory of Pediatric Brain Disease and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Ari WidjajaLaboratory of Pediatric Brain Disease and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Tim L ShawUniversity of California San Diego, La Jolla, California, USA.
Sebastian MarkmillerDepartment of Cellular and Molecular Medicine, Stem Cell Program and Institute for Genomic Medicine, University of California San Diego, La Jolla, California, USA.
Isaac Marin-ValenciaLaboratory of Pediatric Brain Disease and Howard Hughes Medical Institute, The Rockefeller University, New York, New York, USA.
Justin H DaviesDepartment of Paediatric Medicine, University Hospital Southampton NHS Foundation Trust, Southampton, UK.
Linda de MeirleirPediatric Neurology and Metabolic Diseases, Universitair Ziekenhuis Brussels, Vrije Universiteit Brussel, Brussels, Belgium.
Hulya KayseriliMedical Genetics Department, Koc University School of Medicine, Istanbul, Turkey.
Umut AltunogluMedical Genetics Department, Istanbul Medical Faculty, Istanbul University, Istanbul Turkey.
Mary Louise FreckmannDepartment of Clinical Genetics, The Canberra Hospital, Woden, Australian Capital Territory, Australia.
Linda WarwickAustralian Capital Territory Genetic Service, The Canberra Hospital, Canberra City, Australian Capital Territory, Australia.
David ChitayatDepartment of Pediatrics, Division of Clinical and Metabolic Genetics, The Hospital for Sick Children, Toronto, Ontario, Canada.
Susan BlaserDivision of Neuroradiology, Department of Diagnostic Imaging, The Hospital for Sick Children, Toronto, Ontario, Canada.
Ahmet Okay ÇağlayanDepartment of Medical Genetics, School of Medicine, Istanbul Bilim University, Istanbul, Turkey.
Kaya BilguvarDepartment of Genetics, Yale Center for Genome Analysis, Yale University School of Medicine, New Haven, Connecticut, USA.
Huseyin PerDivision of Pediatric Neurology, Department of Pediatrics, Erciyes University School of Medicine, Kayseri, Turkey.
Christina FagerbergDepartment of Clinical Genetics, Odense University Hospital, Odense, Denmark.
Henrik T ChristesenHans Christian Andersen Children's Hospital, Odense University Hospital, Odense, Denmark.
Maria KibaekHans Christian Andersen Children's Hospital, Odense University Hospital, Odense, Denmark.
Kimberly A AldingerCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, Washington, USA.
David ManchesterDepartment of Pediatrics, Clinical Genetics and Metabolism, University of Colorado School of Medicine, Children's Hospital Colorado, Aurora, Colorado, USA.
Naomichi MatsumotoDepartment of Human Genetics, Yokohama City University, Graduate School of Medicine, Yokohama, Japan.
Kazuhiro MuramatsuDepartment of Pediatrics, Gunma University School of Medicine, Showa-machi, Maebashi City, Japan.
Hirotomo SaitsuDepartment of Human Genetics, Yokohama City University, Graduate School of Medicine, Yokohama, Japan.
Masaaki ShiinaDepartment of Biochemistry, Yokohama City University Graduate School of Medicine, Yokohama, Japan.
Kazuhiro OgataDepartment of Biochemistry, Yokohama City University Graduate School of Medicine, Yokohama, Japan.
Nicola FouldsSouthampton University Hospitals Trust, Southampton, UK.
William B DobynsCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, Washington, USA.
Neil C ChiUCSD Cardiology, University of California San Diego, La Jolla, California, USA.
David TraverDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, California, USA.
Luigina SpacciniClinical Genetics Unit, Department of Women, Mother and Neonates, "Vittore Buzzi" Children's Hospital, Istituti Clinici di Perfezionamento, Milan, Italy.
Stefania Maria BovaChild Neurology Unit, Department of Pediatrics, "Vittore Buzzi" Children Hospital, Istituti Clinici di Perfezionamento, Milan, Italy.
Stacey B GabrielBroad Institute of Harvard and MIT, Cambridge, Massachusetts, USA.
Murat GunelYale Program on Neurogenetics, Departments of Neurosurgery, Neurobiology and Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Enza Maria ValenteSection of Neurosciences, Department of Medicine and Surgery, University of Salerno, Salerno, Italy.
Marie-Cecile NassognePediatric Neurology, Université Catholique de Louvain, Cliniques Universitaires Saint-Luc, Brussels, Belgium.
Eric J BennettUniversity of California San Diego, La Jolla, California, USA.
Gene W YeoDepartment of Cellular and Molecular Medicine, Stem Cell Program and Institute for Genomic Medicine, University of California San Diego, La Jolla, California, USA.
Frank BaasDepartment of Clinical Genetics, Academic Medical Center, Amsterdam, the Netherlands.ORCID http://orcid.org/0000-0003-3912-5428
Jens Lykke-AndersenUniversity of California San Diego, La Jolla, California, USA.
Joseph G GleesonUniversity of California San Diego, La Jolla, California, USA.
Howard Hughes Medical Institute · USUniversity of California San Diego · USOdense University Hospital · DKYokohama City University · JPAmsterdam UMC Location University of Amsterdam · NLCanberra Hospital · AUIstituti Clinici di Perfezionamento · ITUniversity Hospital Southampton NHS Foundation Trust · GBYale University · USAgency for Science, Technology and Research · SGBroad Institute · USChildren's Hospital Colorado · USCliniques Universitaires Saint-Luc · BEErciyes University · TRGunma University · JPHamamatsu University School of Medicine · JPHospital for Sick Children · CAIstanbul Bilim University · TRIstanbul University · TRKoç University · TR

Funding

Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6M
UCSD/SDSU IRACDAK12GM068524 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TREJO, JOANN · 2003 to 2025
$24.4M
GENETIC MECHANISMS AND REGULATIONT32GM007240 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMPTON, RANDOLPH Y. · 1985 to 2019
$23.8M
Joint Center for Mendelian GenomicsUM1HG008900 · NHGRI · BROAD INSTITUTE, INC. · PI O'DONNELL-LURIA, ANNE, REHM, HEIDI L · 2016 to 2020
$16.5M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
Functional RNA elements in the human genomeR01HG004659 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Kevin Daniel Corbett, Eugene Wei-Ming Yeo · 2008 to 2026
$12.4M
Yale Center for Mendelian DisordersU54HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2012 to 2015
$11.0M
De novo copy number variation and gene discovery in human brain malformationsR01NS058721 · NINDS · UNIVERSITY OF CHICAGO · PI ARGILLI, EMANUELA · 2008 to 2025
$10.9M
The Genetic Basis of Mid-Hindbrain MalformationsR01NS050375 · NINDS · UNIVERSITY OF MINNESOTA · PI DOBYNS, WILLIAM B. · 2005 to 2019
$9.9M
U of Calif, San Diego Neuroscience Microscopy ImagingP30NS047101 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G, ZHENG, BINHAI · 2003 to 2022
$9.0M
Project 3. Genetic Models of Human Structural Brain Defects in ZebrafishP01HD070494 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G · 2011 to 2016
$6.7M
Molecular Characterization of Joubert SyndromeR01NS048453 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G · 2004 to 2020
$6.0M
European Research Council 260888NHGRI NIH HHS R01 HG004659NHGRI NIH HHS U54 HG003067NHGRI NIH HHS U54 HG006504NHGRI NIH HHS UM1 HG006493NHGRI NIH HHS UM1 HG008900NICHD NIH HHS K99 HD082337NICHD NIH HHS P01 HD070494NICHD NIH HHS R00 HD082337NIGMS NIH HHS F32 GM106706NIGMS NIH HHS K12 GM068524NIGMS NIH HHS R01 GM077243NIGMS NIH HHS R35 GM118069NIGMS NIH HHS T32 GM007240NINDS NIH HHS P30 NS047101NINDS NIH HHS R01 NS041537NINDS NIH HHS R01 NS048453NINDS NIH HHS R01 NS050375NINDS NIH HHS R01 NS052455NINDS NIH HHS R01 NS058721NINDS NIH HHS R01 NS075449NINDS NIH HHS R01 NS098004
6 · The paper itself

Abstract

Deadenylases are best known for degrading the poly(A) tail during mRNA decay. The deadenylase family has expanded throughout evolution and, in mammals, consists of 12 Mg

Indexed as

AllelesAnimalsCerebellar DiseasesExonucleasesFemaleHumansMaleMiceMutationNeurodegenerative DiseasesNuclear ProteinsRNA, MessengerRNA, Small NuclearSpliceosomesZebrafishExonucleasesNuclear ProteinsRNA, MessengerRNA, Small NuclearTOE1 protein, human

Identifiers

PMID28092684
PMCPMC5325768
OpenAlexW2578261095

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.