Evidence map›Paper›PMID 28092681›Full record

ArticleNature genetics2017

Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance.

Abigail L Manson, Keira A Cohen, Thomas Abeel, Christopher A Desjardins, Derek T Armstrong, Clifton E Barry, Jeannette Brand, TBResist Global Genome Consortium, Sinéad B Chapman, Sang-Nae Cho and 37 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 152 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
152citing papers in PubMed, 2 pooled it
22.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

152 citing papers in PubMed, 2 syntheses or guidelines pooled it, 294 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Article
  5. Article
  6. Article
  7. Predicting isoniazid resistance inJournal of clinical microbiology · 2026
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  8. Ag(I) complexes with natural products and triphenylphosphine: activity against tumor cell lines and mycobacterium tuberculosis.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Mutations inInfection and drug resistance · 2026
    Article
  14. Article
  15. Observational
  16. Article
  17. Review
  18. Genetic determinants ofMicrobiology spectrum · 2025
    Article
  19. Review
  20. Loss of theScience advances · 2025
    Article

92 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

47 authors at 18 institutions in 13 countries.

Abigail L MansonBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.ORCID http://orcid.org/0000-0002-3800-0714
Keira A CohenBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Thomas AbeelBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.ORCID http://orcid.org/0000-0002-7205-7431
Christopher A DesjardinsBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Derek T ArmstrongCenter for Tuberculosis Research, Johns Hopkins University, Baltimore, Maryland, USA.
Clifton E BarryNational Institute of Allergy and Infectious Disease, National Institutes of Health, Bethesda, Maryland, USA.
Jeannette BrandMedical Research Council, TB Platform, Pretoria, South Africa.
TBResist Global Genome Consortium
Sinéad B ChapmanBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Sang-Nae ChoInternational Tuberculosis Research Center, Changwon and Department of Microbiology, Yonsei University College of Medicine, Seoul, South Korea.
Andrei GabrielianOffice of Cyber Infrastructure and Computational Biology, National Institutes of Health, Rockville, Maryland, USA.
James GomezBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Andreea M JodalsClinical Hospital of Pneumology Leon Daniello, Cluj Napoca, Romania.
Moses JolobaDepartment of Medical Microbiology, Mycobacteriology Laboratory, Makerere University, Kampala, Uganda.
Pontus JureenPublic Health Agency of Sweden, Solna, Sweden.
Jong Seok LeeInternational Tuberculosis Research Center, Changwon and Department of Microbiology, Yonsei University College of Medicine, Seoul, South Korea.
Lesibana MalingaMedical Research Council, TB Platform, Pretoria, South Africa.
Mamoudou MaigaUniversity of Sciences, Techniques and Technologies of Bamako (USTTB), Bamako, Mali.
Dale NordenbergNovasano Health and Science, New York, New York, USA.
Ecaterina NorocMicrobiology and Morphology Laboratory, Phthisiopneumology Institute, Chisinau, Moldova.
Elena RomancencoMicrobiology and Morphology Laboratory, Phthisiopneumology Institute, Chisinau, Moldova.
Alex SalazarBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.ORCID http://orcid.org/0000-0002-8453-8769
Willy SsengoobaDepartment of Medical Microbiology, Mycobacteriology Laboratory, Makerere University, Kampala, Uganda.
A A VelayatiMycobacteriology Research Centre, National Research Institute of Tuberculosis and Lung Disease (NRITLD), Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Kathryn WingleeCenter for Tuberculosis Research, Johns Hopkins University, Baltimore, Maryland, USA.
Aksana ZalutskayaRepublican Research and Practical Centre for Pulmonology and Tuberculosis, Minsk, Belarus.
Laura E ViaNational Institute of Allergy and Infectious Disease, National Institutes of Health, Bethesda, Maryland, USA.
Gail H CassellDepartment of Global Health and Social Medicine, Harvard Medical School, Division of Global Health Equity, Brigham and Women's Hospital, Boston, Massachusetts, USA.
Susan E DormanCenter for Tuberculosis Research, Johns Hopkins University, Baltimore, Maryland, USA.
Jerrold EllnerSection of Infectious Diseases, Boston Medical Center, Boston, Massachusetts, USA.
Parissa FarniaMycobacteriology Research Centre, National Research Institute of Tuberculosis and Lung Disease (NRITLD), Shahid Beheshti University of Medical Sciences, Tehran, Iran.
James E GalaganBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Alex RosenthalOffice of Cyber Infrastructure and Computational Biology, National Institutes of Health, Rockville, Maryland, USA.
Valeriu CruduMicrobiology and Morphology Laboratory, Phthisiopneumology Institute, Chisinau, Moldova.
Daniela HomorodeanClinical Hospital of Pneumology Leon Daniello, Cluj Napoca, Romania.
Po-Ren HsuehNational Taiwan University Hospital, National Taiwan University College of Medicine, Taipei, Taiwan.
Sujatha NarayananNational Institute for Research in Tuberculosis, Chennai, India.
Alexander S PymKwaZulu-Natal Research Institute for TB and HIV (K-RITH), Durban, South Africa.
Alena SkrahinaRepublican Research and Practical Centre for Pulmonology and Tuberculosis, Minsk, Belarus.
Soumya SwaminathanNational Institute for Research in Tuberculosis, Chennai, India.
Martie Van der WaltMedical Research Council, TB Platform, Pretoria, South Africa.
David AllandRutgers-New Jersey Medical School, Newark, New Jersey, USA.
William R BishaiKwaZulu-Natal Research Institute for TB and HIV (K-RITH), Durban, South Africa.
Ted CohenHarvard T.H. Chan School of Public Health, Boston, Massachusetts, USA.
Sven HoffnerPublic Health Agency of Sweden, Solna, Sweden.
Bruce W BirrenBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Ashlee M EarlBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Broad Institute · USJohns Hopkins University · USNational Institutes of Health · USPhthisiopneumology Institute "Chiril Draganiuc" · MDSouth African Medical Research Council · ZAClinica de Pneumologie Iaşi · ROMakerere University · UGMasih Daneshvari Hospital · IRNational Institute of Research in Tuberculosis · INPublic Health Agency of Sweden · SERepublican Scientific and Practical Centre of Pulmonology and Tuberculosis · BYYonsei University · KRBoston Medical Center · USBrigham and Women's Hospital · USHarvard University · USNational Taiwan University Hospital · TWRutgers, The State University of New Jersey · USUniversité des Sciences, des Techniques et des Technologies de Bamako · ML

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI CUOMO, CHRISTINA A · 2014 to 2024
$66.5M
Observational Antiretroviral Studies In Southern Africa (OASIS) CollaborationU01AI069924 · NIAID · UNIVERSITAT BERN · PI Cleophas Chimbetete, Mary-Ann Davies · 2006 to 2026
$55.9M
International Tuberculosis Research in ChinaZIAAI001081 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI BARRY, CLIFTON · 2010 to 2025
$12.2M
Training Program in Cellular and Molecular MedicineT32GM008752 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI RAO, RAJINI · 2000 to 2019
$11.7M
Mycobacterium tuberculosis Survival Regulatory GenesR01AI037856 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BISHAI, WILLIAM RAMSES · 1997 to 2020
$7.2M
International Research in Korea: Clinical Studies of Drug-Resistant TuberculosisZIAAI001067 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI BARRY, CLIFTON · 2009 to 2017
$6.9M
Host-Pathogen Interactions in a Failing Global lineage of MTBC:M.africanumR01AI110386 · NIAID · UNIV OF SCIENCES, TECH & TECH OF BAMAKO · PI DIALLO, SOULEYMANE · 2014 to 2018
$1.2M
NIAID NIH HHS HHSN272200900018CNIAID NIH HHS HHSN272200900050CNIAID NIH HHS R01 AI037856NIAID NIH HHS R01 AI110386NIAID NIH HHS U01 AI069924NIAID NIH HHS U19 AI110818NIGMS NIH HHS T32 GM008752
6 · The paper itself

Abstract

Multidrug-resistant tuberculosis (MDR-TB), caused by drug-resistant strains of Mycobacterium tuberculosis, is an increasingly serious problem worldwide. Here we examined a data set of whole-genome sequences from 5,310 M. tuberculosis isolates from five continents. Despite the great diversity of these isolates with respect to geographical point of isolation, genetic background and drug resistance, the patterns for the emergence of drug resistance were conserved globally. We have identified harbinger mutations that often precede multidrug resistance. In particular, the katG mutation encoding p.Ser315Thr, which confers resistance to isoniazid, overwhelmingly arose before mutations that conferred rifampicin resistance across all of the lineages, geographical regions and time periods. Therefore, molecular diagnostics that include markers for rifampicin resistance alone will be insufficient to identify pre-MDR strains. Incorporating knowledge of polymorphisms that occur before the emergence of multidrug resistance, particularly katG p.Ser315Thr, into molecular diagnostics should enable targeted treatment of patients with pre-MDR-TB to prevent further development of MDR-TB.

Indexed as

Antitubercular AgentsBacterial ProteinsCatalaseDrug Resistance, Multiple, BacterialGenomicsHumansIsoniazidMutationMycobacterium tuberculosisPolymorphism, GeneticRifampinTuberculosis, Multidrug-ResistantAntitubercular AgentsBacterial ProteinsCatalaseIsoniazidkatG protein, Mycobacterium tuberculosisRifampin

Identifiers

PMID28092681
PMCPMC5402762
OpenAlexW2576072275

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.