ArticleScientific reports2017
Development and Evaluation of a High Density Genotyping 'Axiom_Arachis' Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.
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91 citing papers in PubMed.
- The curious case of sporadic nematode susceptibility in "Tifguard" peanut (Arachis hypogaea): seed mixture or genetic instability?G3 (Bethesda, Md.) · 2026Article
- Understanding the genetics of quality traits in groundnut: GWAS highlights drought-responsive markers and candidate genes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- QTL rich genomic clusters in wheat: a catalogue for resistance toFrontiers in plant science · 2026Review
- Surprisingly frequent chromosomal instability in cultivated peanut.The Plant journal : for cell and molecular biology · 2025Article
- From bottleneck to boom: Polyploidy, genetic instability and response to artificial selection resolve the peanut paradox.The Plant journal : for cell and molecular biology · 2025Article
- Genome wide association study uncovers significant SNPs and candidate genes for kernel grades in groundnut (Arachis hypogaea L.).BMC genomics · 2025Article
- Identification of high blanchability donors, candidate genes and markers in groundnut.BMC plant biology · 2025Article
- Integrative genomics and genetics from evolutionary insights to precision breeding in peanuts (Arachis Hypogaea L.).Functional & integrative genomics · 2025Review
- Dissecting the genomic regions, candidate genes and pathways using multi-locus genome-wide association study for stem rot disease resistance in groundnut.The plant genome · 2025Article
- Development of a cost-effective high-throughput mid-density 5K genotyping assay for germplasm characterization and breeding in groundnut.The plant genome · 2025Article
- Genome-wide association analysis in peanut accessions uncovers the genetic basis regulating oil and fatty acid variation.BMC plant biology · 2025Article
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- Genomic selection, gene editing, and reproductive biotechnology: a triad for the improvement of native buffalo breeds in a developing country perspective like Pakistan.Tropical animal health and production · 2025Review
- Multi-locus genome wide association study uncovers genetics of fresh seed dormancy in groundnut.BMC plant biology · 2024Article
- Dissecting genomic regions and underlying candidate genes in groundnut MAGIC population for drought tolerance.BMC plant biology · 2024Article
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- Celebrating Professor Rajeev K. Varshney's transformative research odyssey from genomics to the field on his induction as Fellow of the Royal Society.Plant biotechnology journal · 2024Article
- Genomic Analysis of Romanian Lycium Genotypes: ExploringInternational journal of molecular sciences · 2024Article
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- Understanding the impacts of drought on peanutsFrontiers in genetics · 2024Review
31 more citing papers are in PubMed but not listed here.
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18 authors.
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Abstract
Single nucleotide polymorphisms (SNPs) are the most abundant DNA sequence variation in the genomes which can be used to associate genotypic variation to the phenotype. Therefore, availability of a high-density SNP array with uniform genome coverage can advance genetic studies and breeding applications. Here we report the development of a high-density SNP array 'Axiom_Arachis' with 58 K SNPs and its utility in groundnut genetic diversity study. In this context, from a total of 163,782 SNPs derived from DNA resequencing and RNA-sequencing of 41 groundnut accessions and wild diploid ancestors, a total of 58,233 unique and informative SNPs were selected for developing the array. In addition to cultivated groundnuts (Arachis hypogaea), fair representation was kept for other diploids (A. duranensis, A. stenosperma, A. cardenasii, A. magna and A. batizocoi). Genotyping of the groundnut 'Reference Set' containing 300 genotypes identified 44,424 polymorphic SNPs and genetic diversity analysis provided in-depth insights into the genetic architecture of this material. The availability of the high-density SNP array 'Axiom_Arachis' with 58 K SNPs will accelerate the process of high resolution trait genetics and molecular breeding in cultivated groundnut.
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