Evidence map›Paper›PMID 28090127›Full record

ArticleJournal of the American Statistical Association2016

Parametrization of white matter manifold-like structures using principal surfaces.

Chen Yue, Vadim Zipunnikov, Pierre-Louis Bazin, Dzung Pham, Daniel Reich, Ciprian Crainiceanu, Brian Caffo

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Statistical Association, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Principal Manifold Estimation via Model Complexity Selection.Journal of the Royal Statistical Society. Series B, Statistical methodology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Chen YueDepartment of Biostatistics, Johns Hopkins University, Baltimore, MD, 21205.
Vadim ZipunnikovDepartment of Biostatistics, Johns Hopkins University, Baltimore, MD, 21205.
Pierre-Louis BazinDepartment of Neurophysics, Max Planck Institute, Leipzig, Germany, 04103.
Dzung PhamCenter for Neuroscience and Regenerative Medicine, Henry Jackson Foundation, Bethesda, MD 20892.
Daniel ReichDepartment of Radiology and Imaging Sciences, National Institute of Health, Bethesda, MD 20892.
Ciprian CrainiceanuDepartment of Biostatistics, Johns Hopkins University, Baltimore, MD, 21205.
Brian CaffoDepartment of Biostatistics, Johns Hopkins University, Baltimore, MD, 21205.
Johns Hopkins University · USCenter for Neuroscience and Regenerative Medicine · USNational Institutes of Health · US

Funding

TR&D 4: Algorithms for functional and anatomical brain analysisP41EB015909 · NIBIB · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI VAN ZIJL, PETER CM · 2012 to 2020
$13.1M
Statistical Methods for Multilevel Multivariate Functional StudiesR01NS060910 · NINDS · JOHNS HOPKINS UNIVERSITY · PI Ciprian M Crainiceanu · 2009 to 2026
$8.3M
Statistical methods for large n and p problemsR01EB012547 · NIBIB · JOHNS HOPKINS UNIVERSITY · PI CAFFO, BRIAN SCOTT · 2010 to 2016
$2.1M
Statistical Methods for Mapping Human Brain DevelopmentR01MH095836 · NIMH · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI REISS, PHILIP T · 2012 to 2016
$2.1M
Brain Image Analysis Tools for Quantitative Longitudinal Assessment of MSR01NS070906 · NINDS · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI PHAM, DZUNG L · 2010 to 2014
$1.7M
Statistical methods for biosignals with varying domainsR01HL123407 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI CRAINICEANU, CIPRIAN M · 2014 to 2017
$1.6M
NHLBI NIH HHS R01 HL123407NIBIB NIH HHS P41 EB015909NIBIB NIH HHS R01 EB012547NIMH NIH HHS R01 MH095836NINDS NIH HHS R01 NS060910NINDS NIH HHS R01 NS070906
6 · The paper itself

Abstract

In this manuscript, we are concerned with data generated from a diffusion tensor imaging (DTI) experiment. The goal is to parameterize manifold-like white matter tracts, such as the corpus callosum, using principal surfaces. The problem is approached by finding a geometrically motivated surface-based representation of the corpus callosum and visualized fractional anisotropy (FA) values projected onto the surface. The method also applies to any other diffusion summary. An algorithm is proposed that 1) constructs the principal surface of a corpus callosum; 2) flattens the surface into a parametric 2D map; 3) projects associated FA values on the map. The algorithm is applied to a longitudinal study containing 466 diffusion tensor images of 176 multiple sclerosis (MS) patients observed at multiple visits. For each subject and visit the study contains a registered DTI scan of the corpus callosum at roughly 20,000 voxels. Extensive simulation studies demonstrate fast convergence and robust performance of the algorithm under a variety of challenging scenarios.

Indexed as

Corpus CallosumPrincipal Curves and SurfacesThin Plate Splines

Identifiers

PMID28090127
PMCPMC5224707
OpenAlexW200560428

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.