ArticleJournal of experimental botany2017
Identification of regulatory networks and hub genes controlling soybean seed set and size using RNA sequencing analysis.
Article in Journal of experimental botany, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.
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99 citing papers in PubMed, 151 citations in OpenAlex.
- Decoding the landscape of cell-type-specific co-expressed transcription factors in soybean.Nature plants · 2026Article
- An underutilized genetic component in the regulation of soybean seed weight.Nature communications · 2026Article
- Integrative Transcriptomic Analysis and Co-Expression Network Characterization of Soybean Developmental Tissues.Plants (Basel, Switzerland) · 2026Article
- A single-MYB transcription factor GmMYB331 regulates seed oil accumulation and seed size/weight in soybean.Journal of integrative plant biology · 2026Article
- Identification of candidate loci regulating seed-associated traits in soybean using genome-wide association study and image-based high-throughput phenotyping.Frontiers in plant science · 2026Article
- Natural variation of theFrontiers in plant science · 2026Article
- Transcriptome and Metabolome Analyses Reveal the Accumulation Mechanism of Carbohydrates DuringBiomolecules · 2025Article
- Identification of Novel Genetic Loci Related to 100-Seed Weight in the Korean Soybean Core Collection Using a Genome-Wide Association Study.International journal of molecular sciences · 2025Article
- Single-Cell Omics in Legumes: Research Trends and Applications.Plants (Basel, Switzerland) · 2025Review
- The miR172a-ERF416/413 module regulates soybean seed traits.Journal of integrative plant biology · 2025Article
- GmCDC7 is involved in coordinating seed size and quality in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Transcriptome analysis reveals the mechanisms underlying petal growth during the flower opening process in Phalaenopsis orchids.BMC plant biology · 2025Article
- GWAS analysis revealed genomic loci and candidate genes associated with the 100-seed weight in high-latitude-adapted soybean germplasm.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Article
- Identification of superior haplotypes and candidate gene for seed size-related traits in soybean (Molecular breeding : new strategies in plant improvement · 2025Article
- Transcriptome profiling of eight Zea mays lines identifies genes responsible for the resistance to Fusarium verticillioides.BMC plant biology · 2024Article
- Comparative transcriptomic and hormonal analyses reveal potential regulation networks of adventitious root formation in Metasequoia glyptostroboides Hu et Cheng.BMC genomics · 2024Article
- Harnessing Multi-Omics Strategies and Bioinformatics Innovations for Advancing Soybean Improvement: A Comprehensive Review.Plants (Basel, Switzerland) · 2024Review
- Revolutionizing soybean genomics: How CRISPR and advanced sequencing are unlocking new potential.Functional & integrative genomics · 2024Review
- Genetic Analysis of Soybean Flower Size Phenotypes Based on Computer Vision and Genome-Wide Association Studies.International journal of molecular sciences · 2024Article
39 more citing papers are in PubMed but not listed here.
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Authors and funding
6 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
To understand the gene expression networks controlling soybean seed set and size, transcriptome analyses were performed in three early seed developmental stages, using two genotypes with contrasting seed size. The two-dimensional data set provides a comprehensive and systems-level view on dynamic gene expression networks underpinning soybean seed set and subsequent development. Using pairwise comparisons and weighted gene coexpression network analyses, we identified modules of coexpressed genes and hub genes for each module. Of particular importance are the discoveries of specific modules for the large seed size variety and for seed developmental stages. A large number of candidate regulators for seed size, including those involved in hormonal signaling pathways and transcription factors, were transiently and specifically induced in the early developmental stages. The soybean homologs of a brassinosteroid signaling receptor kinase, a brassinosteroid-signaling kinase, were identified as hub genes operating in the seed coat network in the early seed maturation stage. Overexpression of a candidate seed size regulatory gene, GmCYP78A5, in transgenic soybean resulted in increased seed size and seed weight. Together, these analyses identified a large number of potential key regulators controlling soybean seed set, seed size, and, consequently, yield potential, thereby providing new insights into the molecular networks underlying soybean seed development.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.