Evidence map›Paper›PMID 28087634›Full record

ArticleDevelopment (Cambridge, England)2017

Genome-wide identification of regulatory elements in Sertoli cells.

Danielle M Maatouk, Anirudh Natarajan, Yoichiro Shibata, Lingyun Song, Gregory E Crawford, Uwe Ohler, Blanche Capel

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Identification ofTranslational andrology and urology · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Cis-Regulatory Control of Mammalian Sex Determination.Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation · 2021
    Review
  14. The Chromatin State during Gonadal Sex Determination.Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation · 2021
    Review
  15. Article
  16. WOMEN IN REPRODUCTIVE SCIENCE: To be or not to be a testis.Reproduction (Cambridge, England) · 2019
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Danielle M MaatoukDepartment of Cell Biology, Duke University, Durham, NC 27710, USA.ORCID 0000-0002-4303-1187
Anirudh NatarajanProgram in Computational Biology and Bioinformatics, Duke University, Durham, NC 27708, USA.
Yoichiro ShibataCenter for Genomic and Computational Biology, Duke University, Durham, NC 27708, USA.
Lingyun SongCenter for Genomic and Computational Biology, Duke University, Durham, NC 27708, USA.
Gregory E CrawfordCenter for Genomic and Computational Biology, Duke University, Durham, NC 27708, USA.
Uwe OhlerDepartment of Biostatistics and Bioinformatics, Duke University, Durham, NC 27708, USA.
Blanche CapelDepartment of Cell Biology, Duke University, Durham, NC 27710, USA blanche.capel@duke.edu.ORCID 0000-0002-6587-0969
Duke University · USNorthwestern University · US

Funding

OPPOSING PATHWAYS IN MAMMALIAN SEX DETERMINATIONR01HD039963 · NICHD · DUKE UNIVERSITY · PI CAPEL, BLANCHE · 2001 to 2025
$4.7M
Opposing Pathways in Mammalian Sex DeterminationR37HD039963 · NICHD · DUKE UNIVERSITY · PI CAPEL, BLANCHE · 2011 to 2020
$3.5M
NICHD NIH HHS R01 HD039963NICHD NIH HHS R37 HD039963
6 · The paper itself

Abstract

A current goal of molecular biology is to identify transcriptional networks that regulate cell differentiation. However, identifying functional gene regulatory elements has been challenging in the context of developing tissues where material is limited and cell types are mixed. To identify regulatory sites during sex determination, we subjected Sertoli cells from mouse fetal testes to DNaseI-seq and ChIP-seq for H3K27ac. DNaseI-seq identified putative regulatory sites around genes enriched in Sertoli and pregranulosa cells; however, active enhancers marked by H3K27ac were enriched proximal to only Sertoli-enriched genes. Sequence analysis identified putative binding sites of known and novel transcription factors likely controlling Sertoli cell differentiation. As a validation of this approach, we identified a novel Sertoli cell enhancer upstream of

Indexed as

Gene Expression Regulation, DevelopmentalGene Regulatory NetworksRegulatory Elements, TranscriptionalAnimalsBinding SitesCell DifferentiationDeoxyribonuclease IEnhancer Elements, GeneticGenes, ReporterGenomeHistonesHomozygoteMaleMiceMutationPromoter Regions, GeneticDeoxyribonuclease IHistonesGenome-wide enhancer profilingMouseSertoli cell developmentSex determination

Identifiers

PMID28087634
PMCPMC5312035
OpenAlexW2573343401

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.