Evidence map›Paper›PMID 28085203›Full record

ArticleThe New phytologist2017

Extensive recent secondary contacts between four European white oak species.

Thibault Leroy, Camille Roux, Laure Villate, Catherine Bodénès, Jonathan Romiguier, Jorge A P Paiva, Carole Dossat, Jean-Marc Aury, Christophe Plomion, Antoine Kremer

Abstract read
In one paragraph

Article in The New phytologist, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Response of Pedunculate Oak (Plants (Basel, Switzerland) · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Biogeography of amphi-adriaticPlant biosystems · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Thibault LeroyBIOGECO, INRA, Université de Bordeaux, Cestas, 33610, France.
Camille RouxDepartment of Ecology and Evolution, University of Lausanne, Lausanne, 1015, Switzerland.
Laure VillateBIOGECO, INRA, Université de Bordeaux, Cestas, 33610, France.
Catherine BodénèsBIOGECO, INRA, Université de Bordeaux, Cestas, 33610, France.
Jonathan RomiguierDepartment of Ecology and Evolution, University of Lausanne, Lausanne, 1015, Switzerland.
Jorge A P PaivaInstituto de Biologia Experimental e Tecnológica, iBET, Apartado 12, Oeiras, 2780-901, Portugal.
Carole DossatInstitut de Genomique (IG), Commissariat à l'Energie Atomique (CEA), Genoscope, Evry, 91057, France.
Jean-Marc AuryInstitut de Genomique (IG), Commissariat à l'Energie Atomique (CEA), Genoscope, Evry, 91057, France.
Christophe PlomionBIOGECO, INRA, Université de Bordeaux, Cestas, 33610, France.
Antoine KremerBIOGECO, INRA, Université de Bordeaux, Cestas, 33610, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Historical trajectories of tree species during the late Quaternary have been well reconstructed through genetic and palaeobotanical studies. However, many congeneric tree species are interfertile, and the timing and contribution of introgression to species divergence during their evolutionary history remains largely unknown. We quantified past and current gene flow events between four morphologically divergent oak species (Quercus petraea, Q. robur, Q. pyrenaica, Q. pubescens), by two independent inference methods: diffusion approximation to the joint frequency spectrum (∂a∂i) and approximate Bayesian computation (ABC). For each pair of species, alternative scenarios of speciation allowing gene flow over different timescales were evaluated. Analyses of 3524 single nucleotide polymorphisms (SNPs) randomly distributed in the genome, showed that these species evolved in complete isolation for most of their history, but recently came into secondary contact, probably facilitated by the most recent period of postglacial warming. We demonstrated that: there was sufficient genetic differentiation before secondary contact for the accumulation of barriers to gene flow; and current European white oak genomes are a mosaic of genes that have crossed species boundaries and genes impermeable to gene flow.

Indexed as

Genetic SpeciationBayes TheoremEuropeGenetic VariationLikelihood FunctionsPhylogenyPrincipal Component AnalysisQuercusSpecies Specificityinterglacial recolonizationQuercusreproductive isolationsecondary contactspeciation

Identifiers

PMID28085203
PMCPMC5624484

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.