Evidence map›Paper›PMID 28084428›Full record

ArticleScientific reports2017

Molecular phylogeny of a novel human adenovirus type 8 strain causing a prolonged, multi-state keratoconjunctivitis epidemic in Germany.

Elias Hage, Werner Espelage, Tim Eckmanns, Daryl M Lamson, Laura Pantó, Tina Ganzenmueller, Albert Heim

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 4 countries.

Elias HageInstitute of Virology, Konsiliarlabor für Adenoviren (KLA, Adenovirus Reference Laboratory); Hannover Medical School, Hannover, Germany.
Werner EspelageDepartment for Infectious Disease Epidemiology, Unit for Nosocomial Infections, Surveillance of Antimicrobial Resistance and Consumption, Robert Koch Institut, Berlin, Germany.
Tim EckmannsDepartment for Infectious Disease Epidemiology, Unit for Nosocomial Infections, Surveillance of Antimicrobial Resistance and Consumption, Robert Koch Institut, Berlin, Germany.
Daryl M LamsonWadsworth Center, New York State Department of Health, Albany, NY, USA.
Laura PantóLaboratory of Genome Sciences, Division of Bioengineering and Bioinformatics, Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Japan.
Tina GanzenmuellerInstitute of Virology, Konsiliarlabor für Adenoviren (KLA, Adenovirus Reference Laboratory); Hannover Medical School, Hannover, Germany.
Albert HeimInstitute of Virology, Konsiliarlabor für Adenoviren (KLA, Adenovirus Reference Laboratory); Hannover Medical School, Hannover, Germany.
Medizinische Hochschule Hannover · DERobert Koch Institute · DEHokkaido University · JPInstitute of Virology of the Slovak Academy of Sciences · SKWadsworth Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The German infectious disease surveillance system revealed an increase of epidemic keratoconjunctivitis (EKC) from an average of 320 cases/year (2001 to 2010) up to 2146 and 1986 cases in 2012 and 2013, respectively. From November 2011 until December 2013 (epidemic period) 85% of typed isolates were human adenovirus type 8 (HAdV-D8), whereas only low level circulation (19%) of HAdV-D8 was observed outside the epidemic period. In order to investigate whether a novel monophyletic HAdV-D8 strain prevailed during the epidemic period, complete genomic sequences of 23 HAdV-D8 isolates were generated by deep sequencing and analyzed phylogenetically. For comparison, eight HAdV-D8 isolates from outside the epidemic period were sequenced. HAdV-D8 isolates of the epidemic period had a very high sequence identity of at least 99.9% and formed a monophyletic cluster with two subclusters. A single outlier was closely related to HAdV-D8 strains isolated prior to the epidemic period. Circulation of the epidemic strain was detected as early as 2010 but not after the epidemic period in 2014. In conclusion, molecular phylogeny of complete genomic sequences proved a monophyletic HAdV-D8 epidemic. However, co-circulation of other HAdV types as well as better reporting may have contributed to the huge increase of reported cases.

Indexed as

GenotypeAdenoviruses, HumanAdenovirus Infections, HumanAdultAgedDisease OutbreaksDNA, ViralFemaleGenome, ViralGeographyGermanyHumansKeratoconjunctivitisMaleMiddle AgedOdds RatioDNA, Viral

Identifiers

PMID28084428
PMCPMC5234003
OpenAlexW2575031784

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.