ArticleGenome biology and evolution2016
A SNP-Enabled Assessment of Genetic Diversity, Evolutionary Relationships and the Identification of Candidate Genes in Chrysanthemum.
Article in Genome biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 35 citations in OpenAlex.
- The origin and domestication of modern cultivated Chrysanthemum × morifolium.Nature plants · 2026Article
- Elucidation of the genetic basis underlying rooting ability in vegetatively propagated chrysanthemum.Horticulture research · 2026Article
- Genetic Differentiation of Chinese Fir Populations From Mainland China and Taiwan as Revealed by Genotyping-By-Sequencing Analysis, With Implication for Taxonomic Position of the Species.Ecology and evolution · 2025Article
- Transcriptome Analysis of the Regulatory Mechanisms of Holly (Plants (Basel, Switzerland) · 2024Article
- Gene-expression profiling of individuals resilient to Alzheimer's disease reveals higher expression of genes related to metallothionein and mitochondrial processes and no changes in the unfolded protein response.Acta neuropathologica communications · 2024Article
- Genetic architecture and genomic prediction of plant height-related traits in chrysanthemum.Horticulture research · 2024Article
- Transcriptome analysis of flower colour reveals the correlation between SNP and differential expression genes in Phalaenopsis.Genes & genomics · 2023Article
- Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum.Nature communications · 2023Article
- Flavonoids - flowers, fruit, forage and the future.Journal of the Royal Society of New Zealand · 2023Review
- Phenotypic differences among and within extant populations of Chrysanthemum arcticum L. and C. a. subsp. arcticum.BMC plant biology · 2022Article
- Towards the Improvement of Ornamental Attributes in Chrysanthemum: Recent Progress in Biotechnological Advances.International journal of molecular sciences · 2022Review
- Descriptive Genomic Analysis and Sequence Genotyping of the Two Papaya Species (Vasconcellea pubescens and Vasconcellea chilensis) Using GBS Tools.Plants (Basel, Switzerland) · 2022Article
- The genusFrontiers in plant science · 2022Review
- Genome-wide association study, haplotype analysis, and genomic prediction reveal the genetic basis of yield-related traits in soybean (Frontiers in genetics · 2022Article
- Uncovering phylogenetic relationships and genetic diversity of water dropwort using phenotypic traits and SNP markers.PloS one · 2021Article
- Anthocyanins in Floral Colors: Biosynthesis and Regulation in Chrysanthemum Flowers.International journal of molecular sciences · 2020Review
- Identification of Ear Morphology Genes in Maize (Frontiers in genetics · 2020Article
- Identification of favorable SNP alleles and candidate genes responsible for inflorescence-related traits via GWAS in chrysanthemum.Plant molecular biology · 2019Article
- Genome-wide association study identifies favorable SNP alleles and candidate genes for waterlogging tolerance in chrysanthemums.Horticulture research · 2019Article
- Current achievements and future prospects in the genetic breeding of chrysanthemum: a review.Horticulture research · 2019Review
Corrections and comments
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Authors and funding
9 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Varieties of the economically important ornamental species chrysanthemum have been bred to fit a number of market niches, but the genetic basis and evolutionary relationships among various cultivated types are poorly understood. Here, a DNA marker-based analysis of 199 chrysanthemum entries representing each of the five cultivated types is presented. A set of >90,000 single nucleotide polymorphisms (SNPs) associated with a minor allele frequency of at least 5% was defined, and used to perform a phylogenetic analysis which corresponded well with the phenotypic classification. The analysis revealed that the small-flowered types, spray cut chrysanthemum (SCC) and potted and ground chrysanthemum (PGC), are more closely related to the wild progenitor species (WC) than are the large-flowered ones, disbud cut chrysanthemum (DCC) and traditional chrysanthemum (TC); and the PGC type was closest. Some 550 genetic regions appeared to have experienced selection in the separation of potted and ground-cover types from disbud cut types, and that between potted and ground-cover types from traditional types. A genome-wide association analysis revealed that seven SNPs lying within six genes were predictive of three important traits (ray floret type, cultivated type and flower shape), but no association with flower color was detected. The study has provided a number of novel insights into evolutionary relationships, the population structure and the genetic basis of some key ornamental traits.
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