Evidence map›Paper›PMID 28082391›Full record

ArticleNucleic acids research2017

FACT is a sensor of DNA torsional stress in eukaryotic cells.

Alfiya Safina, Peter Cheney, Mahadeb Pal, Leonid Brodsky, Alexander Ivanov, Kirill Kirsanov, Ekaterina Lesovaya, Denis Naberezhnov, Elimelech Nesher, Igor Koman and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
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  13. Inflammatory cell death PANoptosis is induced by the anti-cancer curaxin CBL0137 via eliciting the assembly of ZBP1-associated PANoptosome.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2024
    Article
  14. Article
  15. Article
  16. The Z-nucleic acid sensor ZBP1 in health and disease.The Journal of experimental medicine · 2023
    Article
  17. Article
  18. Z-DNA and Z-RNA: Methods-Past and Future.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  19. Review
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Alfiya SafinaDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY 14127, USA.
Peter CheneyDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY 14127, USA.
Mahadeb PalDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY 14127, USA.
Leonid BrodskyDepartment of Evolutionary & Environmental Biology, Tauber Bioinformatics Research Center, University of Haifa, Mount Carmel, Haifa 31905, Israel.
Alexander IvanovDepartment of Chemical Carcinogenesis, Institute of Carcinogenesis, Blokhin Cancer Research Center RAMS, Moscow 115478, Russia.
Kirill KirsanovDepartment of Chemical Carcinogenesis, Institute of Carcinogenesis, Blokhin Cancer Research Center RAMS, Moscow 115478, Russia.
Ekaterina LesovayaDepartment of Chemical Carcinogenesis, Institute of Carcinogenesis, Blokhin Cancer Research Center RAMS, Moscow 115478, Russia.
Denis NaberezhnovDepartment of Chemical Carcinogenesis, Institute of Carcinogenesis, Blokhin Cancer Research Center RAMS, Moscow 115478, Russia.
Elimelech NesherDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY 14127, USA.
Igor KomanDepartment of Molecular Biology, Ariel University, Ariel 40700, Israel.
Dan WangDepartment of Bioinformatics, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY 14127, USA.
Jianming WangDepartment of Bioinformatics, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY 14127, USA.
Marianna YakubovskayaDepartment of Chemical Carcinogenesis, Institute of Carcinogenesis, Blokhin Cancer Research Center RAMS, Moscow 115478, Russia.
Duane WinklerDepartment of Molecular and Cell Biology, University of Texas at Dallas, 800 W. Campbell Rd., Richardson, TX 75080, USA.
Katerina GurovaDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY 14127, USA.
Roswell Park Comprehensive Cancer Center · USAriel University · ILRyazan State Medical University named after Academician I.P. Pavlov · RUThe University of Texas at Dallas · USUniversity of Haifa · IL

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MARK G FRATTINI · 1985 to 2026
$116.6M
Modulation of cancer specific transcriptional factors with small moleculesR01CA197967 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI GUROVA, KATERINA V · 2015 to 2019
$2.0M
Safety and anti-cancer efficacy of FACT inactivation in miceR21CA198395 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI GUROVA, KATERINA V · 2015 to 2016
$420k
NCI NIH HHS P30 CA016056NCI NIH HHS R01 CA197967NCI NIH HHS R21 CA198395
6 · The paper itself

Abstract

Transitions of B-DNA to alternative DNA structures (ADS) can be triggered by negative torsional strain, which occurs during replication and transcription, and may lead to genomic instability. However, how ADS are recognized in cells is unclear. We found that the binding of candidate anticancer drug, curaxin, to cellular DNA results in uncoiling of nucleosomal DNA, accumulation of negative supercoiling and conversion of multiple regions of genomic DNA into left-handed Z-form. Histone chaperone FACT binds rapidly to the same regions via the SSRP1 subunit in curaxin-treated cells. In vitro binding of purified SSRP1 or its isolated CID domain to a methylated DNA fragment containing alternating purine/pyrimidines, which is prone to Z-DNA transition, is much stronger than to other types of DNA. We propose that FACT can recognize and bind Z-DNA or DNA in transition from a B to Z form. Binding of FACT to these genomic regions triggers a p53 response. Furthermore, FACT has been shown to bind to other types of ADS through a different structural domain, which also leads to p53 activation. Thus, we propose that FACT acts as a sensor of ADS formation in cells. Recognition of ADS by FACT followed by a p53 response may explain the role of FACT in DNA damage prevention.

Indexed as

Nucleic Acid ConformationCell LineChromatinChromatin Assembly and DisassemblyChromosomal Proteins, Non-HistoneDNADNA-Binding ProteinsEukaryotic CellsHumansMicrosatellite RepeatsModels, BiologicalNucleosomesProtein BindingProtein SubunitsTranscription FactorsChromatinChromosomal Proteins, Non-HistoneDNADNA-Binding ProteinsNucleosomesProtein SubunitsTranscription Factors

Identifiers

PMID28082391
PMCPMC5389579
OpenAlexW2576256914

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.