Evidence map›Paper›PMID 28081968›Full record

ArticleVaccine2017

The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype 1.

Jennifer E Cornick, Özlem Tastan Bishop, Feyruz Yalcin, Anmol M Kiran, Benjamin Kumwenda, Chrispin Chaguza, Shanil Govindpershad, Sani Ousmane, Madikay Senghore, Mignon du Plessis and 15 more

Open access · hybridAbstract read
In one paragraph

Article in Vaccine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Post-VaccinationMicroorganisms · 2020
    Article
  6. Observational
  7. Article
  8. Epidemiology Characteristics ofFrontiers in cellular and infection microbiology · 2019
    Article
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 13 institutions in 8 countries.

Jennifer E CornickMalawi-Liverpool Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi; Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool L69 7BE, UK. Electronic address: j.cornick@liv.ac.uk.
Özlem Tastan BishopResearch Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, South Africa.
Feyruz YalcinPathogen Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.
Anmol M KiranMalawi-Liverpool Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi; Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool L69 7BE, UK.
Benjamin KumwendaMalawi-Liverpool Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi.
Chrispin ChaguzaMalawi-Liverpool Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi; Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool L69 7BE, UK.
Shanil GovindpershadCentre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases, A Division of the National Health Laboratory Service, Johannesburg, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Sani OusmaneCentre de Recherche Médicale et Sanitaire, Niamey, Niger.
Madikay SenghoreMedical Research Council, Banjul, Gambia; Division of Translational and Systems Medicine, Microbiology and Infection Unit, The University of Warwick, UK.
Mignon du PlessisCentre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases, A Division of the National Health Laboratory Service, Johannesburg, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Gerd PluschkeSwiss Tropical and Public Health Institute, Basel, Switzerland.
Chinelo EbrukeMedical Research Council, Banjul, Gambia.
Lesley McGeeCenters for Disease Control and Prevention, Atlanta, USA.
Beutel SigaùqueCentro de Investigação em Saúde da Manhiça, Maputo, Mozambique.
Jean-Marc CollardCentre de Recherche Médicale et Sanitaire, Niamey, Niger.
Stephen D BentleyResearch Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, South Africa.
Aras KadiogluClinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool L69 7BE, UK.
Martin AntonioMedical Research Council, Banjul, Gambia; Division of Translational and Systems Medicine, Microbiology and Infection Unit, The University of Warwick, UK; Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, UK.
Anne von GottbergCentre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases, A Division of the National Health Laboratory Service, Johannesburg, South Africa; School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Neil FrenchClinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool L69 7BE, UK.
Keith P KlugmanHubert Department of Global Health, Rollins School of Public Health, Emory University, USA.
Robert S HeydermanMalawi-Liverpool Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi.
Mark AldersonPATH, Seattle, WA, USA.
Dean B EverettMalawi-Liverpool Wellcome Trust Clinical Research Programme, Queen Elizabeth Central Hospital, Blantyre, Malawi; Clinical Infection, Microbiology and Immunology, Institute of Infection and Global Health, University of Liverpool, Liverpool L69 7BE, UK.
PAGe consortium
Queen Elizabeth Central Hospital · MWMRC Unit the Gambia · GMUniversity of the Witwatersrand · ZACentre de Recherche Médicale et Sanitaire · NERhodes University · ZAUniversity of Liverpool · GBCenters for Disease Control and Prevention · USEmory University · USMalawi-Liverpool-Wellcome Trust Clinical Research Programme · MWManhiça Health Research Centre · MZProgram for Appropriate Technology in Health · USSwiss Tropical and Public Health Institute · CHWellcome Sanger Institute · GB

Funding

H3ABioNet: a sustainable African Bioinformatics Network for H3AfricaU41HG006941 · NHGRI · UNIVERSITY OF CAPE TOWN · PI MULDER, NICOLA · 2012 to 2017
$14.8M
Medical Research Council MC_PC_14110Medical Research Council MC_U190074190Medical Research Council MC_U190081991Medical Research Council MR/R003076/1NHGRI NIH HHS U41 HG006941Wellcome Trust
6 · The paper itself

Abstract

Serotype 1 is one of the most common causes of pneumococcal disease worldwide. Pneumococcal protein vaccines are currently being developed as an alternate intervention strategy to pneumococcal conjugate vaccines. Pre-requisites for an efficacious pneumococcal protein vaccine are universal presence and minimal variation of the target antigen in the pneumococcal population, and the capability to induce a robust human immune response. We used in silico analysis to assess the prevalence of seven protein vaccine candidates (CbpA, PcpA, PhtD, PspA, SP0148, SP1912, SP2108) among 445 serotype 1 pneumococci from 26 different countries, across four continents. CbpA (76%), PspA (68%), PhtD (28%), PcpA (11%) were not universally encoded in the study population, and would not provide full coverage against serotype 1. PcpA was widely present in the European (82%), but not in the African (2%) population. A multi-valent vaccine incorporating CbpA, PcpA, PhtD and PspA was predicted to provide coverage against 86% of the global population. SP0148, SP1912 and SP2108 were universally encoded and we further assessed their predicted amino acid, antigenic and structural variation. Multiple allelic variants of these proteins were identified, different allelic variants dominated in different continents; the observed variation was predicted to impact the antigenicity and structure of two SP0148 variants, one SP1912 variant and four SP2108 variants, however these variants were each only present in a small fraction of the global population (<2%). The vast majority of the observed variation was predicted to have no impact on the efficaciousness of a protein vaccine incorporating a single variant of SP0148, SP1912 and/or SP2108 from S. pneumoniae TIGR4. Our findings emphasise the importance of taking geographic differences into account when designing global vaccine interventions and support the continued development of SP0148, SP1912 and SP2108 as protein vaccine candidates against this important pneumococcal serotype.

Indexed as

Antigenic VariationAfricaAllelesAmino Acid SequenceAntigens, BacterialAsiaBacterial ProteinsEuropeGeographyGlobal HealthHumansModels, MolecularPneumococcal InfectionsPneumococcal VaccinesSerogroupSouth AmericaAntigens, BacterialBacterial ProteinsPneumococcal VaccinesVaccines, SubunitAntigenic diversityAntigenic profilingMulti-valentPCVPneumococcal diseaseProtein modellingStructural diversityVariant

Identifiers

PMID28081968
PMCPMC5287219
OpenAlexW2569902669

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.