Evidence map›Paper›PMID 28080992›Full record

ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2016

Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii.

Rhys A Farrer, Kerstin Voelz, Daniel A Henk, Simon A Johnston, Matthew C Fisher, Robin C May, Christina A Cuomo

Abstract read
In one paragraph

Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Acta biochimica et biophysica Sinica · 2024
    Article
  2. Article
  3. Intestinal bacteria-a powerful weapon for fungal infections treatment.Frontiers in cellular and infection microbiology · 2023
    Review
  4. Gene, virulence and related regulatory mechanisms inActa biochimica et biophysica Sinica · 2022
    Review
  5. Article
  6. Review
  7. Review
  8. Review
  9. Interactions between invasive fungi and symbiotic bacteria.World journal of microbiology & biotechnology · 2020
    Review
  10. Review
  11. Article
  12. Article
  13. Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Article
  15. Genotypic and Phenotypic Diversity ofFrontiers in microbiology · 2018
    Article
  16. Article
  17. Review
  18. Article
  19. Tackling emerging fungal threats to animal health, food security and ecosystem resilience.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rhys A FarrerGenome Sequencing and Analysis Program, The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA rfarrer@broadinstitute.org.ORCID 0000-0001-8456-7458
Kerstin VoelzInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham B15 2TT, UK.
Daniel A HenkDepartment of Infectious Disease Epidemiology, School of Public Health, Imperial College London, London W2 1PG, UK.
Simon A JohnstonInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham B15 2TT, UK.
Matthew C FisherDepartment of Infectious Disease Epidemiology, School of Public Health, Imperial College London, London W2 1PG, UK.ORCID 0000-0002-1862-6402
Robin C MayInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham B15 2TT, UK.
Christina A CuomoGenome Sequencing and Analysis Program, The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-5778-960X

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI CUOMO, CHRISTINA A · 2014 to 2024
$66.5M
Department of HealthEuropean Research Council 614562Medical Research Council G0601171Medical Research Council MR/J009156/1NIAID NIH HHS U19 AI110818Wellcome TrustWellcome Trust WT088148MF
6 · The paper itself

Abstract

Emerging fungal pathogens cause an expanding burden of disease across the animal kingdom, including a rise in morbidity and mortality in humans. Yet, we currently have only a limited repertoire of available therapeutic interventions. A greater understanding of the mechanisms of fungal virulence and of the emergence of hypervirulence within species is therefore needed for new treatments and mitigation efforts. For example, over the past decade, an unusual lineage of Cryptococcus gattii, which was first detected on Vancouver Island, has spread to the Canadian mainland and the Pacific Northwest infecting otherwise healthy individuals. The molecular changes that led to the development of this hypervirulent cryptococcal lineage remain unclear. To explore this, we traced the history of similar microevolutionary events that can lead to changes in host range and pathogenicity. Here, we detail fine-resolution mapping of genetic differences between two highly related Cryptococcus gattii VGIIc isolates that differ in their virulence traits (phagocytosis, vomocytosis, macrophage death, mitochondrial tubularization and intracellular proliferation). We identified a small number of single site variants within coding regions that potentially contribute to variations in virulence. We then extended our methods across multiple lineages of C. gattii to study how selection is acting on key virulence genes within different lineages.This article is part of the themed issue 'Tackling emerging fungal threats to animal health, food security and ecosystem resilience'.

Indexed as

Evolution, MolecularGenome, FungalHost SpecificityChromosome MappingCryptococcosisCryptococcus gattiiHumansMetagenomicsPhylogenyVirulenceCryptococcus gattiiintracellular proliferationmicroevolutionmitochondrial tubularization

Identifiers

PMID28080992
PMCPMC5095545

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.