Evidence map›Paper›PMID 28079198›Full record

ArticlePhysical chemistry chemical physics : PCCP2017

Oligomerization of FVFLM peptides and their ability to inhibit beta amyloid peptides aggregation: consideration as a possible model.

M Kouza, A Banerji, A Kolinski, I A Buhimschi, A Kloczkowski

Abstract read
In one paragraph

Article in Physical chemistry chemical physics : PCCP, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. AβJournal of molecular histology · 2024
    Article
  5. Review
  6. Article
  7. Article
  8. Small Peptides for Inhibiting Serum Amyloid A Aggregation.ACS medicinal chemistry letters · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Out-of-Register AβJournal of chemical theory and computation · 2018
    Article
  14. Article
  15. Molecular dynamics simulations of early steps in RNA-mediated conversion of prions.Protein science : a publication of the Protein Society · 2017
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 3 countries.

M KouzaFaculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland. mkouza@chem.uw.edu.pl and Nationwide Children's Hospital, Battelle Center for Mathematical Medicine, Columbus, OH 43215, USA.ORCID http://orcid.org/0000-0002-1704-9797
A BanerjiNationwide Children's Hospital, Battelle Center for Mathematical Medicine, Columbus, OH 43215, USA.
A KolinskiFaculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland. mkouza@chem.uw.edu.pl.
I A BuhimschiCenter for Perinatal Research, The Research Institute at Nationwide Children's Hospital, Columbus, OH 43215, USA and Department of Pediatrics, The Ohio State University College of Medicine, Columbus, OH 43215, USA.
A KloczkowskiNationwide Children's Hospital, Battelle Center for Mathematical Medicine, Columbus, OH 43215, USA and Department of Pediatrics, The Ohio State University College of Medicine, Columbus, OH 43215, USA.
Nationwide Children's Hospital · USFaculty (United Kingdom) · GB

Funding

Misfoldome-centered multiOMICS approach to unravel preeclampsia subphenotypes.R01HD084628 · NICHD · UNIVERSITY OF ILLINOIS AT CHICAGO · PI BUHIMSCHI, IRINA A · 2015 to 2019
$2.6M
Coarse-Grained Models of ProteinsR01GM072014 · NIGMS · IOWA STATE UNIVERSITY · PI JERNIGAN, ROBERT L · 2004 to 2012
$2.3M
NICHD NIH HHS R01 HD084628NIGMS NIH HHS R01 GM072014
6 · The paper itself

Abstract

Preeclampsia, a pregnancy-specific disorder, shares typical pathophysiological features with protein misfolding disorders including Alzheimer's disease. Characteristic for preeclampsia is the involvement of multiple proteins of which fragments of SERPINA1 and β-amyloid co-aggregate in urine and placenta of preeclamptic women. To explore the biophysical basis of this interaction, we investigated the multidimensional efficacy of the FVFLM sequence in SERPINA1, as a model inhibitory agent of β-amyloid aggregation. After studying the oligomerization of FVFLM peptides using all-atom molecular dynamics simulations with the GROMOS43a1 force field and explicit water, we report that FVFLM can aggregate and its aggregation is spontaneous with a remarkably faster rate than that recorded for KLVFF (aggregation "hot-spot" from β-amyloid). The fast kinetics of FVFLM aggregation was found to be driven primarily by core-like aromatic interactions originating from the anti-parallel orientation of complementarily uncharged strands. The conspicuously stable aggregation mechanism observed for FVFLM peptides is found not to conform to the popular 'dock-lock' scheme. We also found high propensity of FVFLM for KLVFF binding. When present, FVFLM disrupts the β-amyloid aggregation pathway and we propose that FVFLM-like peptides might be used to prevent the assembly of full-length Aβ or other pro-amyloidogenic peptides into amyloid fibrils.

Indexed as

Models, MolecularAmyloid beta-PeptidesKineticsMolecular Dynamics SimulationPeptide FragmentsPeptidesPolymerizationProtein BindingAmyloid beta-Peptidesamyloid beta-protein (16-20)Peptide FragmentsPeptides

Identifiers

PMID28079198
PMCPMC5305032
OpenAlexW2561366344

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.