Evidence map›Paper›PMID 28078731›Full record

ArticleJournal of anatomy2017

Rapid automated landmarking for morphometric analysis of three-dimensional facial scans.

Mao Li, Joanne B Cole, Mange Manyama, Jacinda R Larson, Denise K Liberton, Sheri L Riccardi, Tracey M Ferrara, Stephanie A Santorico, Jordan J Bannister, Nils D Forkert and 3 more

Abstract read
In one paragraph

Article in Journal of anatomy, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Quantification of Facial Traits.Frontiers in genetics · 2019
    Review
  15. Body size and allometric variation in facial shape in children.American journal of physical anthropology · 2018
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Mao LiDepartment of Mathematics, Florida State University, Tallahassee, FL, USA.
Joanne B ColeHuman Medical Genetics and Genomics Program, University of Colorado School of Medicine, Aurora, CO, USA.
Mange ManyamaDepartment of Anatomy, Catholic University of Health and Allied Sciences, Mwanza, Tanzania.
Jacinda R LarsonDepartment of Anatomy and Cell Biology, McCaig Institute for Bone and Joint Health, and Alberta Children's Hospital Research Institute, University of Calgary, Calgary, AB, Canada.
Denise K LibertonNational Institutes of Health (NIDCR), Bethesda, MD, USA.
Sheri L RiccardiHuman Medical Genetics and Genomics Program, University of Colorado School of Medicine, Aurora, CO, USA.
Tracey M FerraraHuman Medical Genetics and Genomics Program, University of Colorado School of Medicine, Aurora, CO, USA.
Stephanie A SantoricoDepartment of Mathematical and Statistical Science, University of Colorado Denver, Denver, CO, USA.
Jordan J BannisterDepartment of Radiology and Hotchkiss Brain Institute, University of Calgary, Calgary, AB, Canada.
Nils D ForkertDepartment of Radiology and Hotchkiss Brain Institute, University of Calgary, Calgary, AB, Canada.
Richard A SpritzHuman Medical Genetics and Genomics Program, University of Colorado School of Medicine, Aurora, CO, USA.
Washington MioDepartment of Mathematics, Florida State University, Tallahassee, FL, USA.
Benedikt HallgrimssonDepartment of Anatomy and Cell Biology, McCaig Institute for Bone and Joint Health, and Alberta Children's Hospital Research Institute, University of Calgary, Calgary, AB, Canada.

Funding

Developing 3D Craniofacial Morphometry Data and Tools to Transform DysmorphologyU01DE024440 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI HALLGRIMSSON, BENEDIKT, KLEIN, OPHIR D · 2014 to 2018
$3.3M
Genetic Determinants of Orofacial Shape and Relationship to Cleft Lip/PalateU01DE020054 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI SPRITZ, RICHARD ANDREW · 2009 to 2014
$2.4M
NIDCR NIH HHS U01 DE020054NIDCR NIH HHS U01 DE024440
6 · The paper itself

Abstract

Automated phenotyping is essential for the creation of large, highly standardized datasets from anatomical imaging data. Such datasets can support large-scale studies of complex traits or clinical studies related to precision medicine or clinical trials. We have developed a method that generates three-dimensional landmark data that meet the requirements of standard geometric morphometric analyses. The method is robust and can be implemented without high-performance computing resources. We validated the method using both direct comparison to manual landmarking on the same individuals and also analyses of the variation patterns and outlier patterns in a large dataset of automated and manual landmark data. Direct comparison of manual and automated landmarks reveals that automated landmark data are less variable, but more highly integrated and reproducible. Automated data produce covariation structure that closely resembles that of manual landmarks. We further find that while our method does produce some landmarking errors, they tend to be readily detectable and can be fixed by adjusting parameters used in the registration and control-point steps. Data generated using the method described here have been successfully used to study the genomic architecture of facial shape in two different genome-wide association studies of facial shape.

Indexed as

Biometric IdentificationFaceGenome-Wide Association StudyHumansImage Processing, Computer-AssistedImaging, Three-Dimensionalautomated landmarkingautomated phenotypingfacefacial imaginghumanmorphometricsphenomicsphenotypingthree-dimensional landmarks

Identifiers

PMID28078731
PMCPMC5345630

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.