Evidence map›Paper›PMID 28077560›Full record

ArticleNucleic acids research2017

Mechanistic insights into type I toxin antitoxin systems in Helicobacter pylori: the importance of mRNA folding in controlling toxin expression.

Hélène Arnion, Dursun Nizam Korkut, Sara Masachis Gelo, Sandrine Chabas, Jérémy Reignier, Isabelle Iost, Fabien Darfeuille

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 41 citations in OpenAlex.

  1. The role of toxin-antitoxin systems inJournal of bacteriology · 2026
    Review
  2. Article
  3. CoccoidVirulence · 2025
    Review
  4. Article
  5. Review
  6. Review
  7. An RNA pseudoknot mediates toxin translation and antitoxin inhibition.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. RNA Regulated Toxin-Antitoxin Systems in Pathogenic Bacteria.Frontiers in cellular and infection microbiology · 2021
    Review
  14. Riboregulation in the Major Gastric PathogenFrontiers in microbiology · 2021
    Review
  15. Improved growth ofJournal of bacteriology · 2021
    Article
  16. A peptide of a type I toxin-antitoxin system inducesProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. The Small ToxicmBio · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Hélène ArnionINSERM U1212, CNRS UMR5320, Univ. Bordeaux, ARNA Laboratory, 146 rue Léo Saignat, F-33076 Bordeaux, France.
Dursun Nizam KorkutINSERM U1212, CNRS UMR5320, Univ. Bordeaux, ARNA Laboratory, 146 rue Léo Saignat, F-33076 Bordeaux, France.
Sara Masachis GeloINSERM U1212, CNRS UMR5320, Univ. Bordeaux, ARNA Laboratory, 146 rue Léo Saignat, F-33076 Bordeaux, France.
Sandrine ChabasINSERM U1212, CNRS UMR5320, Univ. Bordeaux, ARNA Laboratory, 146 rue Léo Saignat, F-33076 Bordeaux, France.
Jérémy ReignierINSERM U1212, CNRS UMR5320, Univ. Bordeaux, ARNA Laboratory, 146 rue Léo Saignat, F-33076 Bordeaux, France.
Isabelle IostINSERM U1212, CNRS UMR5320, Univ. Bordeaux, ARNA Laboratory, 146 rue Léo Saignat, F-33076 Bordeaux, France.
Fabien DarfeuilleINSERM U1212, CNRS UMR5320, Univ. Bordeaux, ARNA Laboratory, 146 rue Léo Saignat, F-33076 Bordeaux, France.
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Type I toxin-antitoxin (TA) systems have been identified in a wide range of bacterial genomes. Here, we report the characterization of a new type I TA system present on the chromosome of the major human gastric pathogen, Helicobacter pylori. We show that the aapA1 gene encodes a 30 amino acid peptide whose artificial expression in H. pylori induces cell death. The synthesis of this toxin is prevented by the transcription of an antitoxin RNA, named IsoA1, expressed on the opposite strand of the toxin gene. We further reveal additional layers of post-transcriptional regulation that control toxin expression: (i) transcription of the aapA1 gene generates a full-length transcript whose folding impedes translation (ii) a 3΄ end processing of this message generates a shorter transcript that, after a structural rearrangement, becomes translatable (iii) but this rearrangement also leads to the formation of two stem-loop structures allowing formation of an extended duplex with IsoA1 via kissing-loop interactions. This interaction ensures both the translation inhibition of the AapA1 active message and its rapid degradation by RNase III, thus preventing toxin synthesis under normal growth conditions. Finally, a search for homologous mRNA structures identifies similar TA systems in a large number of Helicobacter and Campylobacter genomes.

Indexed as

AntitoxinsBacterial ProteinsBacterial ToxinsEscherichia coliGene Expression Regulation, BacterialGenome, BacterialHelicobacter pyloriHumansRibonuclease IIIRNA, BacterialRNA FoldingRNA, MessengerRNA Processing, Post-TranscriptionalAapA1 protein, Helicobacter pyloriAntitoxinsBacterial ProteinsBacterial ToxinsRibonuclease IIIRNA, BacterialRNA, Messenger

Identifiers

PMID28077560
PMCPMC5416894
OpenAlexW2572268088

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.