Evidence map›Paper›PMID 28076776›Full record

ArticleCell reports2017

Ptc7p Dephosphorylates Select Mitochondrial Proteins to Enhance Metabolic Function.

Xiao Guo, Natalie M Niemi, Paul D Hutchins, Samson G F Condon, Adam Jochem, Arne Ulbrich, Alan J Higbee, Jason D Russell, Alessandro Senes, Joshua J Coon and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
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  6. Functional redundancy of three mitochondrial MgJournal of Zhejiang University. Science. B · 2025
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  9. Coordinating BNIP3/NIX-mediated mitophagy in space and time.Biochemical Society transactions · 2024
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  13. Increased CONature communications · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Xiao GuoMorgridge Institute for Research, Madison, WI 53715, USA; Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Natalie M NiemiMorgridge Institute for Research, Madison, WI 53715, USA; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Paul D HutchinsDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA; Genome Center of Wisconsin, Madison, WI 53706, USA.
Samson G F CondonDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Adam JochemMorgridge Institute for Research, Madison, WI 53715, USA.
Arne UlbrichDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA; Genome Center of Wisconsin, Madison, WI 53706, USA.
Alan J HigbeeDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA; Genome Center of Wisconsin, Madison, WI 53706, USA.
Jason D RussellMorgridge Institute for Research, Madison, WI 53715, USA; Genome Center of Wisconsin, Madison, WI 53706, USA.
Alessandro SenesDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Joshua J CoonMorgridge Institute for Research, Madison, WI 53715, USA; Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA; Genome Center of Wisconsin, Madison, WI 53706, USA; Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
David J PagliariniMorgridge Institute for Research, Madison, WI 53715, USA; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA. Electronic address: dpagliarini@morgridge.org.
University of Wisconsin–Madison · USMorgridge Institute for Research · USEnergy Center of Wisconsin · US

Funding

Research Training for Computation and Informatics in Biology and MedicineT15LM007359 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI Mark W. Craven, Colin Noel Dewey · 2002 to 2026
$22.6M
TR&D 2 Metabolic Labels for Ultraplexed Protein Quantification p. 453P41GM108538 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COON, JOSHUA J · 2016 to 2025
$13.1M
TRAINING IN NUTRITIONT32DK007665 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI GUY E GROBLEWSKI, Chi- Liang Eric Yen · 1993 to 2026
$9.2M
Structure, Function and Regulation of the ProteomeR35GM118110 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COON, JOSHUA J · 2016 to 2025
$9.1M
Partnership for High-Throughput Enabled Biology of the Mitochondrial ProteomeU01GM094622 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 2010 to 2014
$7.8M
Regulation of Mitochondrial Metabolism by Post-Translational ModificationsR01DK098672 · NIDDK · WASHINGTON UNIVERSITY · PI David J Pagliarini · 2013 to 2026
$4.8M
Structural study of transmembrane interactions in the bacterial divisomeR01GM099752 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI SENES, ALESSANDRO · 2013 to 2017
$1.7M
Systematic functional annotation of the mitochondrial proteomeR01GM115591 · NIGMS · MORGRIDGE INSTITUTE FOR RESEARCH, INC. · PI PAGLIARINI, DAVID J · 2016 to 2018
$1.1M
NIDDK NIH HHS R01 DK098672NIDDK NIH HHS T32 DK007665NIGMS NIH HHS P41 GM108538NIGMS NIH HHS R01 GM099752NIGMS NIH HHS R01 GM115591NIGMS NIH HHS R35 GM118110NIGMS NIH HHS U01 GM094622NLM NIH HHS T15 LM007359
6 · The paper itself

Abstract

Proper maintenance of mitochondrial activity is essential for metabolic homeostasis. Widespread phosphorylation of mitochondrial proteins may be an important element of this process; yet, little is known about which enzymes control mitochondrial phosphorylation or which phosphosites have functional impact. We investigate these issues by disrupting Ptc7p, a conserved but largely uncharacterized mitochondrial matrix PP2C-type phosphatase. Loss of Ptc7p causes respiratory growth defects concomitant with elevated phosphorylation of select matrix proteins. Among these, Δptc7 yeast exhibit an increase in phosphorylation of Cit1p, the canonical citrate synthase of the tricarboxylic acid (TCA) cycle, that diminishes its activity. We find that phosphorylation of S462 can eliminate Cit1p enzymatic activity likely by disrupting its proper dimerization, and that Ptc7p-driven dephosphorylation rescues Cit1p activity. Collectively, our work connects Ptc7p to an essential TCA cycle function and to additional phosphorylation events that may affect mitochondrial activity inadvertently or in a regulatory manner.

Indexed as

AerobiosisMitochondrial ProteinsPhosphoproteinsPhosphorylationPhosphoserineProtein MultimerizationProtein Phosphatase 2ProteomicsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSubstrate SpecificityMitochondrial ProteinsPhosphoproteinsPhosphoserineProtein Phosphatase 2PTC7 protein, S cerevisiaeSaccharomyces cerevisiae Proteinscitrate synthasemitochondriamitochondrial phosphorylationphosphatasephosphoproteomicsPptc7Ptc7

Identifiers

PMID28076776
PMCPMC5234840
OpenAlexW2569558047

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.