Evidence map›Paper›PMID 28076662›Full record

ArticleCellular microbiology2017

Vps13F links bacterial recognition and intracellular killing in Dictyostelium.

Jade Leiba, Ayman Sabra, Romain Bodinier, Anna Marchetti, Wanessa C Lima, Astrid Melotti, Jackie Perrin, Frederic Burdet, Marco Pagni, Thierry Soldati and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Cellular microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Insights into VPS13 properties and function reveal a new mechanism of eukaryotic lipid transport.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2021
    Review
  9. Article
  10. The Ecology and Evolution of Amoeba-Bacterium Interactions.Applied and environmental microbiology · 2021
    Review
  11. Article
  12. Article
  13. A New Family of Bacteriolytic Proteins inFrontiers in cellular and infection microbiology · 2020
    Article
  14. Transcriptional Responses ofFrontiers in microbiology · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. Secreted heme peroxidase fromThe Journal of biological chemistry · 2018
    Article
  19. Evaluating Different Virulence Traits ofFrontiers in cellular and infection microbiology · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Jade LeibaDepartment of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Geneva, Switzerland.ORCID 0000-0001-8751-1169
Ayman SabraDepartment of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Romain BodinierDepartment of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Anna MarchettiDepartment of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Wanessa C LimaDepartment of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Astrid MelottiDepartment of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Jackie PerrinDepartment of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
Frederic BurdetVital-IT, Swiss Institute of Bioinformatics, University of Lausanne, Lausanne, Switzerland.
Marco PagniVital-IT, Swiss Institute of Bioinformatics, University of Lausanne, Lausanne, Switzerland.
Thierry SoldatiDepartment of Biochemistry, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-2056-7931
Emmanuelle LelongGenomic Research Laboratory, Division of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland.
Pierre CossonDepartment of Cell Physiology and Metabolism, Faculty of Medicine, University of Geneva, Geneva, Switzerland.
University of Geneva · CHSIB Swiss Institute of Bioinformatics · CHUniversity Hospital of Geneva · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial sensing, ingestion, and killing by phagocytic cells are essential processes to protect the human body from infectious microorganisms. The cellular mechanisms involved in intracellular killing, their relative importance, and their specificity towards different bacteria are however poorly defined. In this study, we used Dictyostelium discoideum, a phagocytic cell model amenable to genetic analysis, to identify new gene products involved in intracellular killing. A random genetic screen led us to identify the role of Vps13F in intracellular killing of Klebsiella pneumoniae. Vps13F knock-out (KO) cells exhibited a delayed intracellular killing of K. pneumoniae, although the general organization of the phagocytic and endocytic pathway appeared largely unaffected. Transcriptomic analysis revealed that vps13F KO cells may be functionally similar to previously characterized fspA KO cells, shown to be defective in folate sensing. Indeed, vps13F KO cells showed a decreased chemokinetic response to various stimulants, suggesting a direct or indirect role of Vps13F in intracellular signaling. Overstimulation with excess folate restored efficient killing in vps13F KO cells. Finally, genetic inactivation of Far1, the folate receptor, resulted in inefficient intracellular killing of K. pneumoniae. Together, these observations show that stimulation of Dictyostelium by bacterial folate is necessary for rapid intracellular killing of K. pneumoniae.

Indexed as

DictyosteliumFolate Receptor 1Folic AcidGene Knockout TechniquesKlebsiella pneumoniaePhagocytosisProtozoan ProteinsSignal TransductionVesicular Transport ProteinsFolate Receptor 1Folic AcidProtozoan ProteinsVesicular Transport Proteins

Identifiers

PMID28076662
PMCPMC5484366
OpenAlexW2572253837

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.