Evidence map›Paper›PMID 28076381›Full record

ArticlePloS one2017

Stain Deconvolution Using Statistical Analysis of Multi-Resolution Stain Colour Representation.

Najah Alsubaie, Nicholas Trahearn, Shan E Ahmed Raza, David Snead, Nasir M Rajpoot

Abstract readEvaluation Study
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Review
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  12. Deep learning trained on hematoxylin and eosin tumor region of Interest predicts HER2 status and trastuzumab treatment response in HER2+ breast cancer.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2022
    Article
  13. Review
  14. Article
  15. Article
  16. Deep Learning of Histopathology Images at the Single Cell Level.Frontiers in artificial intelligence · 2021
    Review
  17. Article
  18. Article
  19. Review
  20. Fusion in Breast Cancer Histology Classification.ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Najah AlsubaieDepartment of Computer Science, University of Warwick, Coventry, United Kingdom.
Nicholas TrahearnDepartment of Computer Science, University of Warwick, Coventry, United Kingdom.
Shan E Ahmed RazaDepartment of Computer Science, University of Warwick, Coventry, United Kingdom.
David SneadDepartment of Histopathology, University Hospitals Coventry and Warwickshire, Coventry, United Kingdom.
Nasir M RajpootDepartment of Computer Science, University of Warwick, Coventry, United Kingdom.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stain colour estimation is a prominent factor of the analysis pipeline in most of histology image processing algorithms. Providing a reliable and efficient stain colour deconvolution approach is fundamental for robust algorithm. In this paper, we propose a novel method for stain colour deconvolution of histology images. This approach statistically analyses the multi-resolutional representation of the image to separate the independent observations out of the correlated ones. We then estimate the stain mixing matrix using filtered uncorrelated data. We conducted an extensive set of experiments to compare the proposed method to the recent state of the art methods and demonstrate the robustness of this approach using three different datasets of scanned slides, prepared in different labs using different scanners.

Indexed as

AlgorithmsColorModels, StatisticalBreast NeoplasmsColonic NeoplasmsColoring AgentsEosine Yellowish-(YS)FemaleHematoxylinHistological TechniquesHumansImage Processing, Computer-AssistedLung NeoplasmsStaining and LabelingColoring AgentsEosine Yellowish-(YS)Hematoxylin

Identifiers

PMID28076381
PMCPMC5226799

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.