Evidence map›Paper›PMID 28073951›Full record

ArticleJournal of experimental botany2017

Nod factors potentiate auxin signaling for transcriptional regulation and lateral root formation in Medicago truncatula.

Violaine Herrbach, Ximena Chirinos, David Rengel, Kokoévi Agbevenou, Rémy Vincent, Stéphanie Pateyron, Stéphanie Huguet, Sandrine Balzergue, Asher Pasha, Nicholas Provart and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
14.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

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  5. TETRASPANIN 8-1 fromFrontiers in plant science · 2023
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  8. Mechanisms of elevated COPlant cell reports · 2021
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  11. Molecular Basis of Root Nodule Symbiosis betweenPlants (Basel, Switzerland) · 2020
    Review
  12. Article
  13. Article
  14. Article
  15. Plant signaling & behavior · 2019
    Article
  16. Building a future with root architecture.Journal of experimental botany · 2018
    Article
  17. Plant physiology · 2018
    Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Violaine HerrbachLIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.
Ximena ChirinosLIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.
David RengelLIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.
Kokoévi AgbevenouLIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.
Rémy VincentLIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.
Stéphanie PateyronPOPS (transcriptOmic Platform of IPS2) Platform, Institute of Plant Sciences Paris Saclay (IPS2), CNRS, INRA, Université Paris-Sud, Université Evry, Université Paris-Saclay, Orsay, France.
Stéphanie HuguetPOPS (transcriptOmic Platform of IPS2) Platform, Institute of Plant Sciences Paris Saclay (IPS2), CNRS, INRA, Université Paris-Sud, Université Evry, Université Paris-Saclay, Orsay, France.
Sandrine BalzerguePOPS (transcriptOmic Platform of IPS2) Platform, Institute of Plant Sciences Paris Saclay (IPS2), CNRS, INRA, Université Paris-Sud, Université Evry, Université Paris-Saclay, Orsay, France.
Asher PashaDepartment of Cell & Systems Biology/ Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Canada.
Nicholas ProvartDepartment of Cell & Systems Biology/ Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Canada.
Clare GoughLIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.
Sandra BensmihenLIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.
Centre National de la Recherche Scientifique · FRUniversité de Toulouse · FRUniversité Paris Cité · FRUniversity of Toronto · CASorbonne Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nodulation (Nod) factors (NFs) are symbiotic molecules produced by rhizobia that are essential for establishment of the rhizobium-legume endosymbiosis. Purified NFs can stimulate lateral root formation (LRF) in Medicago truncatula, but little is known about the molecular mechanisms involved. Using a combination of reporter constructs, pharmacological and genetic approaches, we show that NFs act on early steps of LRF in M. truncatula, independently of the ethylene signaling pathway and of the cytokinin receptor MtCRE1, but in interaction with auxin. We conducted a whole-genome transcriptomic study upon NF and/or auxin treatments, using a lateral root inducible system adapted for M. truncatula. This revealed a large overlap between NF and auxin signaling and, more interestingly, synergistic interactions between these molecules. Three groups showing interaction effects were defined: group 1 contained more than 1500 genes responding specifically to the combinatorial treatment of NFs and auxin; group 2 comprised auxin-regulated genes whose expression was enhanced or antagonized by NFs; and in group 3 the expression of NF regulated genes was antagonized by auxin. Groups 1 and 2 were enriched in signaling and metabolic functions, which highlights important crosstalk between NF and auxin signaling for both developmental and symbiotic processes.

Indexed as

Gene Expression Regulation, PlantIndoleacetic AcidsLipopolysaccharidesMedicago truncatulaPlant Growth RegulatorsPlant RootsSinorhizobium melilotiIndoleacetic AcidsLipopolysaccharidesPlant Growth RegulatorsAuxinethylenelateral rootlateral root inducible system (LRIS)lipo-chitooligosaccharides (LCOs)NimbleGen arraysNod factorssymbiosistranscriptome

Identifiers

PMID28073951
PMCPMC6055581
OpenAlexW2571136444

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.