Evidence map›Paper›PMID 28072879›Full record

ArticlePloS one2017

Transcriptomic Analysis of Calonectria pseudoreteaudii during Various Stages of Eucalyptus Infection.

Xiaozhen Ye, Hongyi Liu, Yajie Jin, Mengmeng Guo, Aizhen Huang, Quanzhu Chen, Wenshuo Guo, Feiping Zhang, Lizhen Feng

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Mating genes inPersoonia · 2020
    Article
  5. Article
  6. Article
  7. Boxwood blight: an ongoing threat to ornamental and native boxwood.Applied microbiology and biotechnology · 2018
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Xiaozhen YeForestry College, Fujian Agriculture and Forestry University, Fuzhou, China.
Hongyi LiuForestry College, Fujian Agriculture and Forestry University, Fuzhou, China.
Yajie JinForestry College, Fujian Agriculture and Forestry University, Fuzhou, China.
Mengmeng GuoForestry College, Fujian Agriculture and Forestry University, Fuzhou, China.
Aizhen HuangForestry College, Fujian Agriculture and Forestry University, Fuzhou, China.
Quanzhu ChenJinshan College, Fujian Agriculture and Forestry University, Fuzhou, China.
Wenshuo GuoForestry College, Fujian Agriculture and Forestry University, Fuzhou, China.
Feiping ZhangForestry College, Fujian Agriculture and Forestry University, Fuzhou, China.
Lizhen FengForestry College, Fujian Agriculture and Forestry University, Fuzhou, China.
Fujian Agriculture and Forestry University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Eucalyptus leaf blight caused by Calonectria spp. is a serious disease in Eucalyptus seedling and plantations. However, the molecular mechanisms of the infection process and pathogenesis of Calonectria to Eucalyptus is not well-studied. In this study, we analyzed the transcriptomes of C. pseudoreteaudii at three stages of Eucalyptus leaf infection, and in mycelium grown in potato dextrose broth using Illumina RNA-Seq technology. We identified 161 differentially expressed genes between C. pseudoreteaudii from leaf and mycelium grown in potato dextrose broth. GO and KEGG enrichment analyses of these genes suggested that they were mainly involved in oxidoreductase activity, hydrolase activity, and transmembrane transporter activity. Most of the differentially expressed genes at the early infection stage were upregulated. These upregulated genes were mainly involved in cell wall hydrolysis and toxin synthesis, suggesting a role for toxin and cell wall hydrolases in the establishment of Calonectria leaf blight. Genes related to detoxification of phytoalexins were continually upregulated during infection. The candidate effectors and putative pathogenicity determinants identified in this study will help in the functional analysis of C. pseudoreteaudii virulence and pathogenicity.

Indexed as

Gene Expression ProfilingTranscriptomeAscomycotaComputational BiologyEucalyptusGene Expression Regulation, FungalGene OntologyMolecular Sequence AnnotationPlant Diseases

Identifiers

PMID28072879
PMCPMC5224884
OpenAlexW2568125833

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.