Evidence map›Paper›PMID 28071978›Full record

ArticleNucleus (Austin, Tex.)2017

Nup82 functions redundantly with Nup136 in a salicylic acid-dependent defense response of Arabidopsis thaliana.

Kentaro Tamura, Yoichiro Fukao, Noriyuki Hatsugai, Fumiaki Katagiri, Ikuko Hara-Nishimura

Open access · goldAbstract read
In one paragraph

Article in Nucleus (Austin, Tex.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

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  10. Function of Nuclear Pore Complexes in Regulation of Plant Defense Signaling.International journal of molecular sciences · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Kentaro Tamuraa Department of Botany , Graduate School of Science, Kyoto University , Kyoto , Japan.ORCID 0000-0001-7387-2211
Yoichiro Fukaob Department of Bioinformatics , College of Life Sciences, Ritsumeikan University , Shiga , Japan.
Noriyuki Hatsugaic Department of Plant Biology , Microbial and Plant Genomics Institute, University of Minnesota , St. Paul , MN , USA.ORCID 0000-0002-5708-4263
Fumiaki Katagiric Department of Plant Biology , Microbial and Plant Genomics Institute, University of Minnesota , St. Paul , MN , USA.ORCID 0000-0001-6893-3788
Ikuko Hara-Nishimuraa Department of Botany , Graduate School of Science, Kyoto University , Kyoto , Japan.ORCID 0000-0001-8814-1593
Kyoto University · JPUniversity of Minnesota · USRitsumeikan University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nuclear pore complex (NPC) comprises more than 30 nucleoporins (Nups). NPC mediates macromolecular trafficking between the nucleoplasm and the cytoplasm, but specific roles of individual Nups are poorly understood in higher plants. Here, we show that the novel nucleoporin unique to angiosperm plants (designated as Nup82) functions in a salicylic acid-dependent defense in a redundant manner with Nup136, which is a component of the nuclear basket in the NPC. Arabidopsis thaliana Nup82 had a similar amino acid sequence to the N-terminal half of Nup136 and a Nup82-GFP fusion was localized on the nuclear envelope. Immunoprecipitation and bimolecular fluorescence complementation analyses revealed that Nup82 interacts with the NPC components Nup136 and RAE1. The double knockout mutant nup82 nup136 showed severe growth defects, while the single knockout mutant nup82 did not, suggesting that Nup82 functions redundantly with Nup136. nup82 nup136 impaired benzothiadiazole (an analog of salicylic acid)-induced resistance to the virulent bacteria Pseudomonas syringae pv. tomato DC3000. Furthermore, transcriptome analysis of nup82 nup136 indicates that deficiency of Nup82 and Nup136 causes noticeable downregulation of immune-related genes. These results suggest that Nup82 and Nup136 are redundantly involved in transcriptional regulation of salicylic acid-responsive genes through nuclear transport of signaling molecules.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantGene Knockout TechniquesNuclear Pore Complex ProteinsSalicylic AcidArabidopsis ProteinsNuclear Pore Complex ProteinsNup136 protein, ArabidopsisNup82 protein, ArabidopsisSalicylic AcidArabidopsis thaliananuclear envelopenucleoporinNup136/Nup1Nup82plant immunityproteometranscriptome

Identifiers

PMID28071978
PMCPMC5499915
OpenAlexW2570927236

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.